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Report for CCDS47.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47.1 Public Homo sapiens 1 TPRG1L 24 110 108 CCDS HistoryNCBI Gene:127262Re-query CCDS DB by CCDS ID:47.1Re-query CCDS DB by GeneID:127262See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000378344.7 ENSP00000367595.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000378344.7Link to Ensembl Protein Viewer:ENSP00000367595.2Re-query CCDS DB by Nucleotide ID:ENST00000378344Re-query CCDS DB by Protein ID:ENSP00000367595
Original member Current member NCBI NM_182752.4 NP_877429.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_182752.4Link to Protein Sequence:NP_877429.2Re-query CCDS DB by Nucleotide ID:NM_182752Re-query CCDS DB by Protein ID:NP_877429Link to BLAST:NP_877429.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_877429.2 272 Q5T0D9-1 272 100% 0 0

Chromosomal Locations for CCDS 47.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 3625073 3625273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 3625424 3625515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 3625713 3625889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 3627500 3627653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 3628409 3628603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (819 nt):
ATGCTGCAACTGCGGGACTCGGTGGACTCGGCCGGTACGAGCCCCACGGCGGTGCTGGCGGCCGGCGAGG
AGGTGGGGGCAGGCGGCGGCCCGGGCGGGGGGCGGCCGGGGGCGGGGACGCCGCTGCGCCAGACACTCTG
GCCTCTCAGCATCCACGACCCCACGCGCCGCGCCCGCGTCAAGGAGTACTTCGTGTTCCGGCCCGGCAGC
ATCGAGCAGGCAGTGGAGGAGATCCGCGTGGTGGTGCGGCCCGTGGAGGACGGCGAGATCCAGGGAGTGT
GGCTGCTTACCGAGGTGGATCACTGGAACAATGAGAAGGAGCGGCTGGTGCTGGTCACGGAGCAGTCCCT
GCTTATCTGTAAATACGACTTCATCAGTCTCCAGTGCCAGCAGGTGGTGCGGATAGCGCTCAACGCAGTA
GACACCATTTCCTACGGAGAATTCCAGTTTCCCCCTAAATCGCTCAACAAGCGAGAAGGTTTTGGGATTC
GAATTCAGTGGGACAAGCAAAGTCGTCCTTCCTTCATAAACAGATGGAATCCCTGGTCTACCAACGTGCC
CTATGCCACTTTCACAGAACACCCGATGGCTGGCGCAGATGAGAAGACAGCATCTCTGTGTCAGTTGGAA
AGCTTCAAGGCTCTGTTAATCCAAGCTGTCAAAAAAGCCCAAAAAGAAAGCCCTTTGCCAGGACAGGCGA
ATGGCGTGCTGATCCTGGAGCGCCCCCTGCTCATCGAGACCTACGTGGGACTCATGTCCTTCATTAACAA
CGAGGCGAAACTGGGCTACTCCATGACCAGGGGCAAAATAGGCTTTTAG

Translation (272 aa):
MLQLRDSVDSAGTSPTAVLAAGEEVGAGGGPGGGRPGAGTPLRQTLWPLSIHDPTRRARVKEYFVFRPGS
IEQAVEEIRVVVRPVEDGEIQGVWLLTEVDHWNNEKERLVLVTEQSLLICKYDFISLQCQQVVRIALNAV
DTISYGEFQFPPKSLNKREGFGIRIQWDKQSRPSFINRWNPWSTNVPYATFTEHPMAGADEKTASLCQLE
SFKALLIQAVKKAQKESPLPGQANGVLILERPLLIETYVGLMSFINNEAKLGYSMTRGKIGF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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