NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS4026.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4026.1 Public Homo sapiens 5 GCNT4 24 110 108 CCDS HistoryNCBI Gene:51301Re-query CCDS DB by CCDS ID:4026.1Re-query CCDS DB by GeneID:51301See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4026.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000322348.5 ENSP00000317027.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000322348.5Link to Ensembl Protein Viewer:ENSP00000317027.4Re-query CCDS DB by Nucleotide ID:ENST00000322348Re-query CCDS DB by Protein ID:ENSP00000317027
Original member Current member EBI ENST00000652361.2 ENSP00000498836.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000652361.2Link to Ensembl Protein Viewer:ENSP00000498836.1Re-query CCDS DB by Nucleotide ID:ENST00000652361Re-query CCDS DB by Protein ID:ENSP00000498836
Original member Current member NCBI NM_001366737.1 NP_001353666.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001366737.1Link to Protein Sequence:NP_001353666.1Re-query CCDS DB by Nucleotide ID:NM_001366737Re-query CCDS DB by Protein ID:NP_001353666Link to BLAST:NP_001353666.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001353666.1 453 Q9P109 453 100% 0 0

Chromosomal Locations for CCDS 4026.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 75028676 75030037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1362 nt):
ATGAAGATATTCAAATGTTATTTTAAACATACCCTACAGCAGAAAGTTTTCATCCTGTTTTTAACCCTAT
GGCTGCTCTCTTTGTTAAAGCTTCTAAATGTGAGACGACTCTTTCCGCAAAAAGACATTTACTTGGTTGA
GTACTCCCTAAGTACCTCGCCTTTTGTAAGAAACAGATACACTCATGTTAAGGATGAAGTCAGGTATGAA
GTTAACTGTTCGGGTATCTATGAACAGGAGCCTTTGGAAATTGGAAAGAGTCTGGAAATAAGAAGAAGGG
ACATCATTGACTTGGAGGATGATGATGTTGTGGCAATGACCAGTGATTGTGACATTTATCAGACTCTAAG
AGGTTATGCTCAAAAGCTTGTCTCAAAGGAGGAGAAAAGCTTCCCAATAGCCTATTCTTTGGTTGTCCAC
AAAGATGCAATTATGGTTGAAAGGCTTATCCATGCTATATACAACCAGCACAATATTTACTGCATCCATT
ATGATCGTAAGGCACCTGATACCTTCAAAGTTGCCATGAACAATTTAGCTAAGTGCTTCTCCAATATTTT
CATTGCTTCCAAATTAGAGGCTGTGGAATATGCCCACATTTCCAGACTCCAGGCTGATTTAAATTGCTTG
TCGGACCTTCTGAAGTCTTCAATCCAGTGGAAATATGTTATCAACTTGTGTGGGCAAGATTTTCCCCTGA
AGTCAAATTTTGAATTGGTGTCAGAGTTGAAAAAACTCAATGGAGCAAATATGTTGGAGACGGTGAAACC
CCCAAACAGTAAATTGGAAAGATTCACTTACCATCATGAACTTAGACGGGTGCCTTATGAATATGTGAAG
CTACCAATAAGGACAAACATCTCCAAGGAAGCACCCCCCCATAACATTCAGATATTTGTTGGCAGTGCTT
ATTTTGTTTTAAGTCAAGCATTTGTTAAATATATTTTCAACAACTCCATCGTTCAAGACTTTTTTGCCTG
GTCTAAAGACACATACTCTCCTGATGAGCACTTTTGGGCTACCTTGATTCGGGTTCCAGGAATACCTGGG
GAGATTTCCAGATCAGCCCAGGATGTGTCTGATCTGCAGAGTAAGACTCGCCTTGTCAAGTGGAATTACT
ATGAAGGCTTTTTCTATCCCAGTTGTACTGGATCTCACCTTCGAAGCGTGTGTATTTATGGAGCTGCAGA
ATTAAGGTGGCTTATCAAAGATGGACATTGGTTTGCTAATAAATTTGATTCTAAGGTGGACCCTATCTTG
ATTAAATGCTTGGCAGAAAAGCTTGAAGAACAGCAGAGAGACTGGATCACTTTGCCCTCAGAAAAGTTAT
TTATGGATAGAAATCTCACTACCACATCATGA

Translation (453 aa):
MKIFKCYFKHTLQQKVFILFLTLWLLSLLKLLNVRRLFPQKDIYLVEYSLSTSPFVRNRYTHVKDEVRYE
VNCSGIYEQEPLEIGKSLEIRRRDIIDLEDDDVVAMTSDCDIYQTLRGYAQKLVSKEEKSFPIAYSLVVH
KDAIMVERLIHAIYNQHNIYCIHYDRKAPDTFKVAMNNLAKCFSNIFIASKLEAVEYAHISRLQADLNCL
SDLLKSSIQWKYVINLCGQDFPLKSNFELVSELKKLNGANMLETVKPPNSKLERFTYHHELRRVPYEYVK
LPIRTNISKEAPPHNIQIFVGSAYFVLSQAFVKYIFNNSIVQDFFAWSKDTYSPDEHFWATLIRVPGIPG
EISRSAQDVSDLQSKTRLVKWNYYEGFFYPSCTGSHLRSVCIYGAAELRWLIKDGHWFANKFDSKVDPIL
IKCLAEKLEEQQRDWITLPSEKLFMDRNLTTTS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH