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Report for CCDS52940.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52940.1 Public Mus musculus 9 Pth1r 23 108 98 CCDS HistoryNCBI Gene:19228Re-query CCDS DB by CCDS ID:52940.1Re-query CCDS DB by GeneID:19228See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52940.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000006005.11 ENSMUSP00000006005.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000006005.11Link to Ensembl Protein Viewer:ENSMUSP00000006005.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000006005Re-query CCDS DB by Protein ID:ENSMUSP00000006005
Original member Current member EBI ENSMUST00000166716.7 ENSMUSP00000132064.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000166716.7Link to Ensembl Protein Viewer:ENSMUSP00000132064.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000166716Re-query CCDS DB by Protein ID:ENSMUSP00000132064
Original member Current member EBI ENSMUST00000198865.4 ENSMUSP00000143298.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000198865.4Link to Ensembl Protein Viewer:ENSMUSP00000143298.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000198865Re-query CCDS DB by Protein ID:ENSMUSP00000143298
Original member Current member NCBI NM_001083935.1 NP_001077404.1 Accepted alive Link to Nucleotide Sequence:NM_001083935.1Link to Protein Sequence:NP_001077404.1Re-query CCDS DB by Nucleotide ID:NM_001083935Re-query CCDS DB by Protein ID:NP_001077404Link to BLAST:NP_001077404.1
Original member Current member NCBI NM_001083936.1 NP_001077405.1 Accepted alive Link to Nucleotide Sequence:NM_001083936.1Link to Protein Sequence:NP_001077405.1Re-query CCDS DB by Nucleotide ID:NM_001083936Re-query CCDS DB by Protein ID:NP_001077405Link to BLAST:NP_001077405.1
Original member Current member NCBI NM_011199.2 NP_035329.2 Accepted alive Link to Nucleotide Sequence:NM_011199.2Link to Protein Sequence:NP_035329.2Re-query CCDS DB by Nucleotide ID:NM_011199Re-query CCDS DB by Protein ID:NP_035329Link to BLAST:NP_035329.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001077404.1 591 P41593 591 100% 0 0
NP_001077405.1 591 P41593 591 100% 0 0
NP_035329.2 591 P41593 591 100% 0 0

Chromosomal Locations for CCDS 52940.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 110722254 110722634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110723586 110723627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110723710 110723851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110724399 110724493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110724727 110724793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110725113 110725173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110726443 110726596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110726970 110727165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110727411 110727505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110727678 110727796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110727898 110728008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110729595 110729729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110731538 110731640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110742226 110742300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1776 nt):
ATGGGGACCGCCCGGATCGCACCCAGCCTGGCGCTCCTTCTCTGCTGCCCAGTGCTCAGCTCCGCATATG
CGCTGGTGGACGCAGACGATGTCTTTACCAAAGAGGAACAGATTTTCCTGCTGCACCGTGCCCAGGCGCA
ATGTGACAAGCTGCTCAAGGAAGTTCTGCACACAGCAGCCAACATAATGGAGTCAGACAAAGGGTGGACG
CCAGCATCTACGTCAGGGAAGCCCAGGAAAGAGAAGGCACCGGGAAAGTTCTACCCCGAGTCTAAAGAGA
ACAAGGATGTGCCCACCGGCAGCAGGCGCCGAGGGCGTCCCTGTCTGCCAGAGTGGGACAACATCGTTTG
CTGGCCATTGGGGGCACCAGGTGAAGTGGTGGCAGTACCTTGTCCCGATTACATTTATGACTTCAACCAC
AAAGGCCATGCCTACAGACGCTGCGACCGCAATGGCAGCTGGGAGGTGGTTCCAGGGCACAACCGGACGT
GGGCCAACTACAGCGAGTGCCTCAAGTTCATGACCAATGAGACTCGGGAACGGGAGGTATTTGACCGCCT
GGGCATGATCTACACCGTGGGATATTCCATGTCTCTTGCCTCCCTCACCGTGGCTGTGCTCATCCTAGCC
TATTTTAGGCGGCTGCACTGCACGCGCAACTACATCCACATGCACATGTTCCTGTCGTTTATGCTGCGCG
CCGCGAGCATCTTCGTGAAGGACGCTGTGCTCTACTCTGGCTTCACGCTGGATGAGGCCGAGCGCCTCAC
GGAGGAAGAGTTGCATATCATCGCGCAGGTGCCGCCTCCGCCCGCCGCTGCCGCCGTTGGCTACGCTGGC
TGCCGTGTGGCCGTGACCTTCTTCCTCTACTTCCTGGCTACCAACTACTACTGGATTCTGGTGGAGGGAC
TGTACTTACACAGCCTCATCTTCATGGCCTTTTTCTCAGAGAAGAAGTATCTGTGGGGCTTCACCATCTT
TGGCTGGGGTCTGCCGGCTGTCTTCGTGGCTGTGTGGGTCGGTGTCAGAGCAACCTTGGCCAACACTGGG
TGCTGGGACCTGAGCTCTGGGCACAAGAAGTGGATCATCCAGGTGCCCATCCTGGCATCTGTTGTGCTCA
ACTTCATCCTCTTTATCAACATCATCCGGGTGCTTGCCACTAAGCTTCGGGAGACCAATGCGGGCCGGTG
TGACACCAGGCAGCAGTACCGGAAGCTGCTCAGGTCCACGTTGGTGCTTGTGCCACTCTTCGGTGTCCAC
TACACCGTCTTCATGGCCTTGCCGTACACCGAGGTCTCAGGGACACTGTGGCAGATCCAGATGCACTATG
AGATGCTCTTCAACTCCTTCCAGGGATTTTTTGTTGCCATCATATACTGTTTCTGCAATGGTGAGGTGCA
GGCAGAGATTAGGAAGTCTTGGAGCCGCTGGACACTGGCATTGGACTTCAAGCGTAAAGCACGAAGTGGG
AGTAGCAGCTACAGCTATGGCCCAATGGTGTCACACACGAGTGTGACCAATGTGGGCCCCCGTGCAGGAC
TCAGCCTTCCCCTTAGCCCCCGCCTGCTTCCTGCCACCACCAATGGCCACTCCCAGCTGCCTGGCCACGC
CAAGCCGGGCGCTCCAGCCATTGAGAACGAAACCATACCAGTTACTATGACAGTTCCCAAGGACGACGGC
TTCCTTAATGGCTCCTGCTCGGGTCTGGATGAGGAGGCCTCTGGGTCTGCGCGGCCACCTCCATTGTTGC
AGGAAGAATGGGAAACAGTCATGTGA

Translation (591 aa):
MGTARIAPSLALLLCCPVLSSAYALVDADDVFTKEEQIFLLHRAQAQCDKLLKEVLHTAANIMESDKGWT
PASTSGKPRKEKAPGKFYPESKENKDVPTGSRRRGRPCLPEWDNIVCWPLGAPGEVVAVPCPDYIYDFNH
KGHAYRRCDRNGSWEVVPGHNRTWANYSECLKFMTNETREREVFDRLGMIYTVGYSMSLASLTVAVLILA
YFRRLHCTRNYIHMHMFLSFMLRAASIFVKDAVLYSGFTLDEAERLTEEELHIIAQVPPPPAAAAVGYAG
CRVAVTFFLYFLATNYYWILVEGLYLHSLIFMAFFSEKKYLWGFTIFGWGLPAVFVAVWVGVRATLANTG
CWDLSSGHKKWIIQVPILASVVLNFILFINIIRVLATKLRETNAGRCDTRQQYRKLLRSTLVLVPLFGVH
YTVFMALPYTEVSGTLWQIQMHYEMLFNSFQGFFVAIIYCFCNGEVQAEIRKSWSRWTLALDFKRKARSG
SSSYSYGPMVSHTSVTNVGPRAGLSLPLSPRLLPATTNGHSQLPGHAKPGAPAIENETIPVTMTVPKDDG
FLNGSCSGLDEEASGSARPPPLLQEEWETVM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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