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Report for CCDS90666.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90666.1 Public Mus musculus 9 Shisa5 23 108 98 CCDS HistoryNCBI Gene:66940Re-query CCDS DB by CCDS ID:90666.1Re-query CCDS DB by GeneID:66940See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 90666.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000200515.4 ENSMUSP00000142835.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000200515.4Link to Ensembl Protein Viewer:ENSMUSP00000142835.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000200515Re-query CCDS DB by Protein ID:ENSMUSP00000142835
Original member Current member NCBI NM_001357933.1 NP_001344862.1 Accepted alive Link to Nucleotide Sequence:NM_001357933.1Link to Protein Sequence:NP_001344862.1Re-query CCDS DB by Nucleotide ID:NM_001357933Re-query CCDS DB by Protein ID:NP_001344862Link to BLAST:NP_001344862.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001344862.1 171 Q9D7I0-5 171 100% 0 0

Chromosomal Locations for CCDS 90666.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 109051332 109051453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 109055978 109056093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 109056287 109056505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 109056650 109056708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (516 nt):
ATGTTCCTCATGCGATTTCTCTTTTCTGTTAGCAGATTTTCCACCCCCGCGGAGGAGACACCCGAACATC
TGGGTTCAGCGCTGAAATTTCGATCCAGTTTTGACAGTGACCCTATGTCAGGGTTCGGAGCGACCGTCGC
CATTGGCGTGACCATCTTTGTGGTGTTTATTGCCACTATCATCATCTGCTTCACCTGCTCCTGCTGCTGT
CTGTATAAGATGTGCTGCCCCCAACGCCCTGTCGTGACCAACACCACAACTACTACCGTGGTTCATGCCC
CTTACCCTCAGCCTCAACCTCAACCTGTGGCCCCCAGCTATCCTGGACCAACATACCAGGGCTACCATCC
CATGCCCCCCCAGCCAGGAATGCCAGCAGCACCCTACCCAACGCAGTACCCACCACCCTACCTGGCCCAG
CCCACAGGGCCGCCACCCTACCATGAGTCCTTGGCTGGAGCCAGCCAGCCTCCATACAACCCGACCTACA
TGGATTCCCTAAAGACAATTCCCTGA

Translation (171 aa):
MFLMRFLFSVSRFSTPAEETPEHLGSALKFRSSFDSDPMSGFGATVAIGVTIFVVFIATIIICFTCSCCC
LYKMCCPQRPVVTNTTTTTVVHAPYPQPQPQPVAPSYPGPTYQGYHPMPPQPGMPAAPYPTQYPPPYLAQ
PTGPPPYHESLAGASQPPYNPTYMDSLKTIP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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