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Report for CCDS17927.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17927.1 Public Mus musculus 3 Cryz 23 108 98 CCDS HistoryNCBI Gene:12972Re-query CCDS DB by CCDS ID:17927.1Re-query CCDS DB by GeneID:12972See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17927.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029850.14 ENSMUSP00000029850.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029850.14Link to Ensembl Protein Viewer:ENSMUSP00000029850.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000029850Re-query CCDS DB by Protein ID:ENSMUSP00000029850
Original member Current member EBI ENSMUST00000192462.5 ENSMUSP00000142105.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000192462.5Link to Ensembl Protein Viewer:ENSMUSP00000142105.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000192462Re-query CCDS DB by Protein ID:ENSMUSP00000142105
Original member Current member NCBI NM_001357672.1 NP_001344601.1 Accepted alive Link to Nucleotide Sequence:NM_001357672.1Link to Protein Sequence:NP_001344601.1Re-query CCDS DB by Nucleotide ID:NM_001357672Re-query CCDS DB by Protein ID:NP_001344601Link to BLAST:NP_001344601.1
Original member Current member NCBI NM_001357673.1 NP_001344602.1 Accepted alive Link to Nucleotide Sequence:NM_001357673.1Link to Protein Sequence:NP_001344602.1Re-query CCDS DB by Nucleotide ID:NM_001357673Re-query CCDS DB by Protein ID:NP_001344602Link to BLAST:NP_001344602.1
Original member Current member NCBI NM_001357674.1 NP_001344603.1 Accepted alive Link to Nucleotide Sequence:NM_001357674.1Link to Protein Sequence:NP_001344603.1Re-query CCDS DB by Nucleotide ID:NM_001357674Re-query CCDS DB by Protein ID:NP_001344603Link to BLAST:NP_001344603.1
Original member Current member NCBI NM_001357675.1 NP_001344604.1 Accepted alive Link to Nucleotide Sequence:NM_001357675.1Link to Protein Sequence:NP_001344604.1Re-query CCDS DB by Nucleotide ID:NM_001357675Re-query CCDS DB by Protein ID:NP_001344604Link to BLAST:NP_001344604.1
Original member Current member NCBI NM_001357676.1 NP_001344605.1 Accepted alive Link to Nucleotide Sequence:NM_001357676.1Link to Protein Sequence:NP_001344605.1Re-query CCDS DB by Nucleotide ID:NM_001357676Re-query CCDS DB by Protein ID:NP_001344605Link to BLAST:NP_001344605.1
Original member Current member NCBI NM_009968.4 NP_034098.1 Accepted alive Link to Nucleotide Sequence:NM_009968.4Link to Protein Sequence:NP_034098.1Re-query CCDS DB by Nucleotide ID:NM_009968Re-query CCDS DB by Protein ID:NP_034098Link to BLAST:NP_034098.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001344601.1 331 P47199 331 100% 0 0
NP_001344602.1 331 P47199 331 100% 0 0
NP_001344603.1 331 P47199 331 100% 0 0
NP_001344604.1 331 P47199 331 100% 0 0
NP_001344605.1 331 P47199 331 100% 0 0
NP_034098.1 331 P47199 331 100% 0 0

Chromosomal Locations for CCDS 17927.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 154604905 154605015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 154606379 154606531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 154611410 154611573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 154613822 154613873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 154618460 154618609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 154621481 154621588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 154621679 154621774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 154622097 154622258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (996 nt):
ATGGCAACTGGGCAGAAGTTGATGAGGGCTATTCGAGTGTTTGAGTTTGGTGGACCAGAAGTGCTGAAGC
TCCAGTCGGATGTGGTCGTGCCTGTTCCACAGAGCCATCAGGTCCTAATCAAAGTCCACGCCTGCGGTGT
CAACCCAGTAGAGACATACATTCGCTCTGGGGCCTACAGTCGAAAACCTGCCCTACCCTACACTCCAGGC
TCTGATGTGGCTGGGATCATAGAATCCGTTGGAGACAAAGTGTCTGCTTTCAAGAAAGGCGACAGGGTCT
TCTGCTACAGCACCGTCTCTGGTGGCTACGCGGAATTTGCTCTTGCAGCCGATGACACTATCTACCCCCT
GCCCGAGACACTGAACTTCAGGCAGGGGGCTGCCCTGGGGATCCCGTACTTCACGGCCTGCCGAGCTCTG
TTCCACAGTGCCCGTGCTCGAGCTGGCGAAAGCGTTTTGGTTCATGGGGCCAGTGGAGGAGTTGGATTAG
CTACATGCCAGATTGCCAGAGCTCATGGCTTAAAGGTTTTGGGCACAGCTGGTTCTGAGGAAGGAAAAAA
GCTTGTTCTGCAAAACGGAGCCCACGAAGTGTTTAATCACAAAGAAGCCAACTATATTGATAAAATCAAG
ATGTCTGTTGGTGACAAGGACAAGGGGGTTGATGTGATTATTGAGATGCTGGCGAATGAGAACCTTAGCA
ATGACCTGAAGCTTCTGTCCCACGGAGGACGGGTCGTCGTTGTTGGCTGTCGAGGTCCCATTGAGATAAA
CCCAAGGGACACCATGGCAAAAGAAACAAGCATCATTGGGGTCTCTCTCTCTTCTTCCACCAAGGAGGAA
TTTCAACAATTCGCAGGCCTTCTCCAAGCAGGAATAGAAAAAGGTTGGGTGAAACCTGTGATAGGTTCTG
AGTATCCATTGGAGAAAGCAGCCCAGGCCCACGAAGATATCATTCACGGCAGTGGGAAGACGGGGAAAAT
GATTCTCCTCTTATGA

Translation (331 aa):
MATGQKLMRAIRVFEFGGPEVLKLQSDVVVPVPQSHQVLIKVHACGVNPVETYIRSGAYSRKPALPYTPG
SDVAGIIESVGDKVSAFKKGDRVFCYSTVSGGYAEFALAADDTIYPLPETLNFRQGAALGIPYFTACRAL
FHSARARAGESVLVHGASGGVGLATCQIARAHGLKVLGTAGSEEGKKLVLQNGAHEVFNHKEANYIDKIK
MSVGDKDKGVDVIIEMLANENLSNDLKLLSHGGRVVVVGCRGPIEINPRDTMAKETSIIGVSLSSSTKEE
FQQFAGLLQAGIEKGWVKPVIGSEYPLEKAAQAHEDIIHGSGKTGKMILLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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