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Report for CCDS39291.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39291.1 Public Mus musculus 5 Zfp11 23 108 98 CCDS HistoryNCBI Gene:22648Re-query CCDS DB by CCDS ID:39291.1Re-query CCDS DB by GeneID:22648See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39291.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000049778.6 ENSMUSP00000051861.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000049778.6Link to Ensembl Protein Viewer:ENSMUSP00000051861.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000049778Re-query CCDS DB by Protein ID:ENSMUSP00000051861
Original member Current member NCBI NM_172462.4 NP_766050.1 Accepted alive Link to Nucleotide Sequence:NM_172462.4Link to Protein Sequence:NP_766050.1Re-query CCDS DB by Nucleotide ID:NM_172462Re-query CCDS DB by Protein ID:NP_766050Link to BLAST:NP_766050.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766050.1 647 P10751 647 100% 0 0

Chromosomal Locations for CCDS 39291.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 129656452 129658385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 129660770 129660779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1944 nt):
ATGTCCCCAGAGAATCTTTCTGACTGTAACAACTCTGTAAAAGACTTTGATCAACACCCAGAACTTACCA
TC
CGGCAATGTGTGCACAGAGAGAAGCCGTACAAGCAGGAAGAATGTGATGACTCAGCTTGCGATCAGCA
T
CTCAGGGTGCATAAAGGAGGCATGCCCTATGAATGCAAAGACTGTGGGAAAGCCTTTAAATACCGCTCG
GTC
CTCTACCAACACCGCATCATTCACACGGCCGCAAGACCCTACAAATGTAAAGAGTGCGGCAAAGCTT
TC
AAGAGAAGTAGAAACCTCGCTCAGCACCAGGTGACACACAAGAGGGAGAAACCACACAAGTGTGAAGA
G
TGCGGCAGAGCCTTTTCTGCACTTTCTGTCCTTACTCAACACCGCATCACCCACACCGGAGAGAAGCCC
TTC
AAGTGTAAAGAGTGCGGCAGAGCCTTTAAATATAACTCGACCCTTACTCAGCATGAAGTCATTCATA
CT
GAAGCCAAACCCTACAGATGTCAGGAATGTGGCAAAGCCTTCAAGAGGAGCCACACGCTCAGTCAACA
C
CAGGTAATTCATAAAGGGGAGAAACCGCACAAGTGTGACGAGTGTGGCAGGGCCTTCAGTAAGCACTCG
TCT
CTTACACAACACCAGGTCATCCACACCGGAGAAAAGCCCTATCAGTGCAGAGAGTGCGGGAAAGCGT
TC
AGGTATCAATCAACCCTTACCCGACACCACATTGTTCACACCGGCGCCAAACCCTACAAATGCCCAGA
G
TGCGACAAGGCCTTCAATAACAGTTCGACCCTCAGTCGGCACCAGATAATCCACACAGGAGAGAAGCCC
TAC
AAGTGTCAGGAGTGCGGCCGGGCCTTCTACTGCTCCTCCTTCTTGATCCAGCATATGAAGATCCACT
TC
GAGGAGATGCCCTACAGGTGCAGAGAGTGTGGCAAGCCCTTCAGGCTCTCCTCCCAGCTTATCCGACA
C
CAGAGAATCCACACCGGGGAGGAGCCCTACATATGCAGAGAGTGTGGCAAGACCTTCAAGTATCAGTCA
AAC
CTCACCCGCCACCAGATACTTCATACCGGCGCCAAGCCCTACAAATGCCCAGAGTGCGGCAAGGCCT
TC
AATAACAGTTCCACCCTCACCCGGCACCAGATAATCCACACAGGAGAGAAGCCCTACAAGTGTCAGGA
G
TGCAGCAAGGCCTTCTACTGCTCCTCCTACTTGATCCAGCATATGAAGATCCACTTTGAAGAGATTCCC
TAT
AGATGCAAAGAATGTGGTAAACCGTTCAAGTGTTCTTCACAGCTTATCCGACACCAGAGAATCCACA
GC
GGGGAGAAACCCTATATATGTAAGGAGTGCGGCAAGGCCTTCAACTGTACTTCATACCTTACTAAGCA
C
CAGAGGATCCATACCGGGGAGAAACCCTACGTGTGTCAGGAGTGTGGCAAGGCCTTCAACTGTTCTTCC
TAT
CTCTCTAAACATCAGAGGATTCACATTGGAGACAGACTCTATAAATGTAAAGAGTGTGGCAAAGCCT
AC
TACTTCTCCTCACAGCTGAACCGACATCAGAGGATCCATACCGGGGAGAAACCCTATGTGTGCCAGGA
G
TGTGGCAAGGCCTTCAATTGTTCTTCATACCTTACTAAGCACCAGCGCATCCATATTGTAGAAAAACCG
TAT
GTGTGTAAAGAGTGCAGCAAAGCCTTTAGCTGCTCCTCATACCTGACTAAACACCAGAGGATCCATG
CT
GGAGACAGGCTATACAAATGCACAGAGTGTGGCAAAGCCTACTGCTTCTCCTCACAGCTGAACCGACA
T
CAGAGGATCCACACCAGAGAGAGACCCTATAGATGTAAGGAATGTGGCAAGGCCTTTATTACTTCCTCC
TGC
CTTAAACGACACCAGGAAACTCACACTCTCCAGACACCAAACAGTGTATAG


Translation (647 aa):
MSPENLSDCNNSVKDFDQHPELTIRQCVHREKPYKQEECDDSACDQHLRVHKGGMPYECKDCGKAFKYRS
V
LYQHRIIHTAARPYKCKECGKAFKRSRNLAQHQVTHKREKPHKCEECGRAFSALSVLTQHRITHTGEKP
F
KCKECGRAFKYNSTLTQHEVIHTEAKPYRCQECGKAFKRSHTLSQHQVIHKGEKPHKCDECGRAFSKHS
S
LTQHQVIHTGEKPYQCRECGKAFRYQSTLTRHHIVHTGAKPYKCPECDKAFNNSSTLSRHQIIHTGEKP
Y
KCQECGRAFYCSSFLIQHMKIHFEEMPYRCRECGKPFRLSSQLIRHQRIHTGEEPYICRECGKTFKYQS
N
LTRHQILHTGAKPYKCPECGKAFNNSSTLTRHQIIHTGEKPYKCQECSKAFYCSSYLIQHMKIHFEEIP
Y
RCKECGKPFKCSSQLIRHQRIHSGEKPYICKECGKAFNCTSYLTKHQRIHTGEKPYVCQECGKAFNCSS
Y
LSKHQRIHIGDRLYKCKECGKAYYFSSQLNRHQRIHTGEKPYVCQECGKAFNCSSYLTKHQRIHIVEKP
Y
VCKECSKAFSCSSYLTKHQRIHAGDRLYKCTECGKAYCFSSQLNRHQRIHTRERPYRCKECGKAFITSS
C
LKRHQETHTLQTPNSV




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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