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Report for CCDS84727.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
84727.1 Public Mus musculus 4 Trmo 23 108 98 CCDS HistoryNCBI Gene:74753Re-query CCDS DB by CCDS ID:84727.1Re-query CCDS DB by GeneID:74753See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 84727.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030015.5 ENSMUSP00000030015.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030015.5Link to Ensembl Protein Viewer:ENSMUSP00000030015.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000030015Re-query CCDS DB by Protein ID:ENSMUSP00000030015
Original member Current member NCBI NM_001347095.1 NP_001334024.1 Accepted alive Link to Nucleotide Sequence:NM_001347095.1Link to Protein Sequence:NP_001334024.1Re-query CCDS DB by Nucleotide ID:NM_001347095Re-query CCDS DB by Protein ID:NP_001334024Link to BLAST:NP_001334024.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001334024.1 431 Q562D6-1 431 100% 0 0

Chromosomal Locations for CCDS 84727.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 46380051 46380310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 46382059 46382685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 46386094 46386251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 46387568 46387742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 46389318 46389393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1296 nt):
ATGCGCGGCTTGGAGAAGCAGGGCTCGTGTGCTACGGCGGCCCCATGTGGGTGCGTTCAGCCGGCCCTGG
AGGCAGGGAATCTTTTAACTGAGCCAATAGGGTACTTGGAATCATGTTTCCCAGCCAAGATTGGCACTCC
AAGGCAGCCATCCATCTGTAGCCACTCCAGAGCCTGTTTGAAGATCAGAAAGAACATCTTTAATAACCCT
GAGCATTCCTTGATGGGCCTAGAAGAGTTTTCTCATGTTTGGATTTTGTTTGTTTTTCACAAAAATGGCC
ATTTGAACTACAAGGCAAAAGTGCAGCCGCCCAGGCTGAATGGGGCAAAGACTGGAGTGTTCTCCACACG
GAGCCCTCATCGCCCTAATGCCATAGGGCTGACGCTGGCCAAGCTGGAGAAGGTGGAAGGTGGAGCTGTC
TACCTGTCTGGAGTTGACATGATAGACGGCACACCTGTGCTAGACATAAAGCCCTACATTGCTGACTACG
ACTCACCACAGAACCTCAGTGTACACAATGACCACCATAAGCTGAGGGCTGAGGCCCAGGTTGATGGCAC
GGCCAACAGTTGTGACCAGCTGCTGCTCTCAGGGCGTGGGAAAGTACAGCCTCGCCAGAGCACCAAGGAG
AGACCGAAATGCCTTGAAGACAGGACCTCAGGAGAAAACTCTCAGAAGTCCAGAGACATGTCAGAAATCC
AGCACACTTTGCCAGAAGACAGAGAGAGAGCGTTGGATCTGGCACTGGAACCAAGCCGAGGTGAGAGCAT
GGATATGCCCGAAAATCAGCTTGGCCCACCGGAACTGAAGAGCTTTCTGGAAGAAGGCACAGATAGACCA
AGGAAAGTAGAAGGTGCCTTGGTCCTGCCGGGGAGCAGTGCAGAAACACAGTGGGATGCTTCCTACCGTG
CCAGGACAGCTGACAGAGTGCCCTACAGTGTTGTCCCCAGCTGGGTGACAGAGGCTCCTGTAGCCCCTTT
ACAAGTCCGGTTTACTCCTCACGCAGAGATGGATCTGAGGAAGCTCAATTCAGGAGATGCTAGTCAGCCG
TCATTTAAGTACTTCCACTCCGCAGAGGAAGCCAAGCGTGCCATTGAGGCTGTGCTGTCAGCAGATCCTC
GGTCTGTGTACCGCCGGAAGCTCTGCGAGGACCGCCTTTTCTTCTTCACTGTGGACACAGCACATGTCAC
CTGCTGGTTTGGTGATGGCTTCGCAGAGGTTGTGAGGATTAAACTGGCTTCTGAGTCTGTTCAGGTGGCT
GACCCTGAGGAATCCTTGGCGGCCCTGGGGTCTTGA

Translation (431 aa):
MRGLEKQGSCATAAPCGCVQPALEAGNLLTEPIGYLESCFPAKIGTPRQPSICSHSRACLKIRKNIFNNP
EHSLMGLEEFSHVWILFVFHKNGHLNYKAKVQPPRLNGAKTGVFSTRSPHRPNAIGLTLAKLEKVEGGAV
YLSGVDMIDGTPVLDIKPYIADYDSPQNLSVHNDHHKLRAEAQVDGTANSCDQLLLSGRGKVQPRQSTKE
RPKCLEDRTSGENSQKSRDMSEIQHTLPEDRERALDLALEPSRGESMDMPENQLGPPELKSFLEEGTDRP
RKVEGALVLPGSSAETQWDASYRARTADRVPYSVVPSWVTEAPVAPLQVRFTPHAEMDLRKLNSGDASQP
SFKYFHSAEEAKRAIEAVLSADPRSVYRRKLCEDRLFFFTVDTAHVTCWFGDGFAEVVRIKLASESVQVA
DPEESLAALGS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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