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Report for CCDS47219.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47219.1 Public Homo sapiens 5 RNF180 24 110 108 CCDS HistoryNCBI Gene:285671Re-query CCDS DB by CCDS ID:47219.1Re-query CCDS DB by GeneID:285671See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47219.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000389100.9 ENSP00000373752.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000389100.9Link to Ensembl Protein Viewer:ENSP00000373752.4Re-query CCDS DB by Nucleotide ID:ENST00000389100Re-query CCDS DB by Protein ID:ENSP00000373752
Original member Current member NCBI NM_001113561.2 NP_001107033.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001113561.2Link to Protein Sequence:NP_001107033.1Re-query CCDS DB by Nucleotide ID:NM_001113561Re-query CCDS DB by Protein ID:NP_001107033Link to BLAST:NP_001107033.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001107033.1 592 Q86T96-1 592 100% 0 0

Chromosomal Locations for CCDS 47219.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 64200808 64200942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 64212065 64212160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 64213558 64214517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 64217361 64217396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 64325186 64325411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 64330281 64330406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 64369615 64369814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1779 nt):
ATGAAAAGAAGCAAAGAATTGATAACTAAAAATCATAGTCAAGAGGAAACAAGTATTCTTCGTTGTTGGA
AATGTAGAAAATGTATAGCAAGCTCTGGTTGTTTTATGGAGTATCTTGAGAATCAAGTGATTAAGGATAA
AGATGATTCAGTTGATGCTCAAAATATTTGTCATGTGTGGCACATGAATGTAGAAGCCCTTCCAGAATGG
ATAAGCTGCCTAATCCAAAAAGCCCAGTGGACAGTTGGAAAACTGAATTGTCCTTTCTGTGGGGCCCGTT
TAGGGGGCTTTAATTTTGTCAGCACTCCAAAATGTTCCTGTGGCCAGCTTGCAGCTGTACATCTCTCCAA
GAGCCGGACTGATTATCAGCCAACACAGGCAGGCAGACTAATGAGACCATCAGTGAAATACTTGTCACAT
CCTAGAGTTCAGTCAGGTTGTGACAAGGAAGCTCTGCTGACAGGTGGTGGCTCTGAAAACAGAAATCACA
GGCTTTTAAACATGGCCCGAAATAATAATGACCCTGGAAGATTAACAGAAGCACTCTGCCTGGAGGTGCG
ACCAACATATTTTGAGATGAAGAACGAAAAACTGCTGTCCAAAGCATCAGAACCAAAATACCAGCTTTTT
GTTCCCCAGCTTGTGACTGGCAGATGCGCTACAAGAGCTTTTCATAGAAAATCACATAGTTTGGATCTGA
ACATCAGTGAGAAACTGACTTTATTACCCACTTTATATGAAATACATAGTAAGACTACTGCCTATTCCAG
ACTAAATGAAACACAGCCTATTGACCTTTCAGGCTTGCCTTTACAATCTAGTAAAAATAGCTATTCCTTT
CAGAATCCATCCAGTTTTGATCCTAGTATGCTGCTGCAAAGATTTTCAGTGGCCCCCCATGAGACCCAGA
CACAAAGAGGAGGAGAATTTCAGTGTGGTCTAGAAGCTGCTTCAGTGTATTCTGACCATACTAATACTAA
CAATCTGACTTTCCTGATGGACCTGCCCTCAGCTGGCAGGAGCATGCCGGAGGCCTCAGACCAGGAAGAG
CACCTCTCCCCTCTGGACTTCCTGCACTCAGCCAATTTTTCATTGGGCAGCATTAATCAGAGGCTTAATA
AGAGAGAAAGGAGCAAGTTGAAGAATCTAAGAAGGAAACAACGAAGGCGTGAAAGATGGCTACAGAAGCA
GGGTAAATACTCAGGAGTGGGATTGCTGGATCATATGACTTTGAATAATGAGATGAGTACAGATGAAGAC
AATGAATATGCAGAAGAAAAGGATAGCTACATCTGTGCAGTGTGTCTGGACGTTTATTTCAACCCTTATA
TGTGTTACCCTTGCCATCACATCTTCTGTGAGCCCTGCTTACGGACTCTGGCCAAAGACAATCCTTCAAG
CACTCCATGCCCATTGTGTCGGACAATTATTTCTAGAGTCTTTTTCCAAACAGAATTGAACAATGCCACA
AAAACTTTCTTTACTAAAGAATATTTGAAAATAAAACAAAGCTTTCAGAAATCCAACTCTGCAAAATGGC
CCCTACCAAGCTGCAGAAAAGCATTTCATCTTTTTGGAGGTTTCCGCAGACATGCAGCTCCAGTTACAAG
AAGGCAGTTCCCACACGGTGCACACAGGATGGATTACCTGCACTTTGAGGATGATAGCCGTGGATGGTGG
TTTGACATGGATATGGTGATCATATATATTTATTCAGTGAACTGGGTCATTGGATTCATTGTTTTCTGCT
TTCTTTGCTATTTTTTCTTTCCGTTTTAG

Translation (592 aa):
MKRSKELITKNHSQEETSILRCWKCRKCIASSGCFMEYLENQVIKDKDDSVDAQNICHVWHMNVEALPEW
ISCLIQKAQWTVGKLNCPFCGARLGGFNFVSTPKCSCGQLAAVHLSKSRTDYQPTQAGRLMRPSVKYLSH
PRVQSGCDKEALLTGGGSENRNHRLLNMARNNNDPGRLTEALCLEVRPTYFEMKNEKLLSKASEPKYQLF
VPQLVTGRCATRAFHRKSHSLDLNISEKLTLLPTLYEIHSKTTAYSRLNETQPIDLSGLPLQSSKNSYSF
QNPSSFDPSMLLQRFSVAPHETQTQRGGEFQCGLEAASVYSDHTNTNNLTFLMDLPSAGRSMPEASDQEE
HLSPLDFLHSANFSLGSINQRLNKRERSKLKNLRRKQRRRERWLQKQGKYSGVGLLDHMTLNNEMSTDED
NEYAEEKDSYICAVCLDVYFNPYMCYPCHHIFCEPCLRTLAKDNPSSTPCPLCRTIISRVFFQTELNNAT
KTFFTKEYLKIKQSFQKSNSAKWPLPSCRKAFHLFGGFRRHAAPVTRRQFPHGAHRMDYLHFEDDSRGWW
FDMDMVIIYIYSVNWVIGFIVFCFLCYFFFPF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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