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Report for CCDS16698.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16698.2 Public Mus musculus 2 Stard7 23 108 98 CCDS HistoryNCBI Gene:99138Re-query CCDS DB by CCDS ID:16698.2See the combined annotation on chromosome 2 in Sequence Viewer

Public Note for CCDS 16698.1
The coding region has been updated to extend the N-terminus to one that is more supported by available conservation data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 16698.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000110375.8 ENSMUSP00000106004.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110375.8Link to Ensembl Protein Viewer:ENSMUSP00000106004.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000110375Re-query CCDS DB by Protein ID:ENSMUSP00000106004
Original member NCBI NM_139308.2 NP_647469.2 Updated not alive Link to Nucleotide Sequence:NM_139308.2Link to Protein Sequence:NP_647469.2Re-query CCDS DB by Nucleotide ID:NM_139308Re-query CCDS DB by Protein ID:NP_647469
Current member NCBI NM_139308.3 NP_647469.2 Accepted alive Link to Nucleotide Sequence:NM_139308.3Link to Protein Sequence:NP_647469.2Re-query CCDS DB by Nucleotide ID:NM_139308Re-query CCDS DB by Protein ID:NP_647469Link to BLAST:NP_647469.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_647469.2 373 Q8R1R3 373 100% 0 0

Chromosomal Locations for CCDS 16698.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 127270582 127270880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127284095 127284303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127284532 127284581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127290772 127290882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127290958 127291040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127292151 127292250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127295484 127295568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127297107 127297291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1122 nt):
ATGTTCCCGAGGAGGCCACCGGCCACCCTGGCCGCCTGGCTGGCGGGCGCGCGGGGCGGGGGCCTGCTGT
CCGCGCTGGCCAATCAGTGCCGCTTCGTGACGGGCCTGCGCGTGCGGCGAGCGCAGCAGATCGCGCAGCT
CTACGGCCGCCTGTATTCCGAGAGCTCGCGCTGCGCCCTGCTCGGACGCTTCTGGCGCCGGCTGCGAGGC
CGCCCCGGCCATGCCTCTGTTTTGATGGCGGCGCTCTCCGGTGTTTTCGTATGGGACGAGGAGAGAATCC
AGGAGGAGGAGTTGCAGAGGTCCATTAATGAGATGAAACGGTTGGAAGAAATGTCAAATATATTTCAGAG
CTCTGGAGTTGAGAATTACCCTCCCGAACCAAAGTCCCCAGCAGGAGGGAATGAAAAGTCAAAAGACAAG
GAAGAACCCTGGGAAATGGTGATGGACAAGAAACACTTCAAGCTGTGGCGCCGCCCAATTACAGGCACCC
ACCTTTACCAGTACCGAGTTTTTGGAACATACACAGATGTGACTCCCCGACAGTTCTTCAATGTTCAGCT
GGATACAGAGTACAGGAAAAAATGGGATGCCCTTGTGATCAAGCTAGAGGTGATTGAGAGAGATGCTGTT
AGTGGTTCTGAGGTTCTTCATTGGGTAACCCATTTTCCTTATCCAATGTACTCTCGTGATTATGTTTATG
TTCGGCGGTATAGTGTGGATCAGGAAAACAATGTGATGGTCTTGGTGTCACGTGCGGTGGAACACCCCAG
TGTGCCAGAGTCTCCAGAGTTTGTCAGGGTCAGATCTTACGAATCCCAAATGGTTATCCGTCCTCACAAG
TCGTTTGATGAGAATGGCTTTGACTACTTACTGACATACAGTGACAATCCACAGACAGTGTTCCCTCGAT
ACTGTGTCAGTTGGATGGTTTCTAGTGGCATGCCAGATTTCTTGGAGAAGCTGCACATGGCCACTCTGAA
AGCCAAGAACATGGAGATCAAAGTGAAAGACTACATCTCGGCTAAGCCTCTGGAAATGAGCAGTGAGGCC
AAGGCCACTGCTCCATCCCCTGAGCGGAAGAATGAGGGTAGCTGTGGCCCTGCTCGGATTGAGTATGCTT
AA

Translation (373 aa):
MFPRRPPATLAAWLAGARGGGLLSALANQCRFVTGLRVRRAQQIAQLYGRLYSESSRCALLGRFWRRLRG
RPGHASVLMAALSGVFVWDEERIQEEELQRSINEMKRLEEMSNIFQSSGVENYPPEPKSPAGGNEKSKDK
EEPWEMVMDKKHFKLWRRPITGTHLYQYRVFGTYTDVTPRQFFNVQLDTEYRKKWDALVIKLEVIERDAV
SGSEVLHWVTHFPYPMYSRDYVYVRRYSVDQENNVMVLVSRAVEHPSVPESPEFVRVRSYESQMVIRPHK
SFDENGFDYLLTYSDNPQTVFPRYCVSWMVSSGMPDFLEKLHMATLKAKNMEIKVKDYISAKPLEMSSEA
KATAPSPERKNEGSCGPARIEYA


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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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