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Report for CCDS42240.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42240.1 Public Homo sapiens 17 SPAG7 24 110 108 CCDS HistoryNCBI Gene:9552Re-query CCDS DB by CCDS ID:42240.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42240.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000206020.8 ENSP00000206020.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000206020.8Link to Ensembl Protein Viewer:ENSP00000206020.3Re-query CCDS DB by Nucleotide ID:ENST00000206020Re-query CCDS DB by Protein ID:ENSP00000206020
Original member Current member NCBI NM_004890.3 NP_004881.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004890.3Link to Protein Sequence:NP_004881.2Re-query CCDS DB by Nucleotide ID:NM_004890Re-query CCDS DB by Protein ID:NP_004881Link to BLAST:NP_004881.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004881.2 227 O75391 227 100% 0 0

Chromosomal Locations for CCDS 42240.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 4959534 4959643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4959760 4959916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4960022 4960111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4960234 4960318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4960459 4960547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4960786 4960853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4967720 4967804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (684 nt):
ATGGCGGACCTACTGGGCTCCATCCTGAGCTCCATGGAGAAGCCACCCAGCCTCGGTGACCAGGAGACTC
GGCGCAAGGCCCGAGAACAGGCCGCCCGCCTGAAGAAACTACAAGAGCAAGAGAAACAACAGAAAGTGGA
GTTTCGTAAAAGGATGGAGAAGGAGGTGTCAGATTTCATTCAAGACAGTGGGCAGATCAAGAAAAAGTTT
CAGCCAATGAACAAGATCGAGAGGAGCATACTACATGATGTGGTGGAAGTGGCTGGCCTGACATCCTTCT
CCTTTGGGGAAGATGATGACTGTCGCTATGTCATGATCTTCAAAAAGGAGTTTGCACCCTCAGATGAAGA
GCTAGACTCTTACCGTCGTGGAGAGGAATGGGACCCCCAGAAGGCTGAGGAGAAGCGGAAGCTGAAGGAG
CTGGCCCAGAGGCAAGAGGAGGAGGCAGCCCAGCAGGGGCCTGTGGTGGTGAGCCCTGCCAGCGACTACA
AGGACAAGTACAGCCACCTCATCGGCAAGGGAGCAGCCAAAGACGCAGCCCACATGCTACAGGCCAATAA
GACCTACGGCTGTGTGCCCGTGGCCAATAAGAGGGACACACGCTCCATTGAAGAGGCTATGAATGAGATC
AGAGCCAAGAAGCGTCTGCGGCAGAGTGGGGAAGAGTTGCCGCCAACCTCCTAG

Translation (227 aa):
MADLLGSILSSMEKPPSLGDQETRRKAREQAARLKKLQEQEKQQKVEFRKRMEKEVSDFIQDSGQIKKKF
QPMNKIERSILHDVVEVAGLTSFSFGEDDDCRYVMIFKKEFAPSDEELDSYRRGEEWDPQKAEEKRKLKE
LAQRQEEEAAQQGPVVVSPASDYKDKYSHLIGKGAAKDAAHMLQANKTYGCVPVANKRDTRSIEEAMNEI
RAKKRLRQSGEELPPTS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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