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Report for CCDS36647.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36647.1 Public Mus musculus 13 Dtnbp1 23 108 98 CCDS HistoryNCBI Gene:94245Re-query CCDS DB by CCDS ID:36647.1See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36647.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000072329.14 ENSMUSP00000072170.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000072329.14Link to Ensembl Protein Viewer:ENSMUSP00000072170.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000072329Re-query CCDS DB by Protein ID:ENSMUSP00000072170
Original member Current member NCBI NM_025772.4 NP_080048.2 Accepted alive Link to Nucleotide Sequence:NM_025772.4Link to Protein Sequence:NP_080048.2Re-query CCDS DB by Nucleotide ID:NM_025772Re-query CCDS DB by Protein ID:NP_080048Link to BLAST:NP_080048.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080048.2 352 Q91WZ8-1 352 100% 0 0

Chromosomal Locations for CCDS 36647.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 44922207 44922454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 44923149 44923292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 44930996 44931151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 44953172 44953194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 44970046 44970178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 44982741 44982873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 44986035 44986095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 44992019 44992069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 44993685 44993738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 45001917 45001972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1059 nt):
ATGCTGGAGACCCTGCGCGAGCGGCTGCTGAGCGTACAGCAGGATTTCACCTCCGGGCTGAAGACTTTAA
GTGATAAGTCAAGAGAAGCAAAAGTGAAAGGCAAACCCAGGACTGCTCCACGCTTACCGAAGTACTCTGC
TGGACTAGAATTACTTAGCAGGTATGAGGATGCGTGGGCTGCACTTCACAGAAGAGCCAAGGAGTGTGCA
GACGCTGGCGAGCTGGTGGACAGCGAGGTGGTCATGCTGTCTGCCCACTGGGAGAAGAAGAGGACCAGCC
TGAACGAGCTGCAGGGGCAGCTGCAGCAGCTGCCCGCTCTCCTGCAGGACTTGGAGTCTCTGATGGCAAG
CCTGGCTCATTTAGAGACAAGTTTTGAAGAGGTAGAGAACCATTTGCTGCACCTGGAGGACTTGTGTGGG
CAGTGTGAGTTAGAAAGACACAAGCAGGCCCAGGCCCAACACCTGGAGAGCTACAAGAAAAGTAAGAGGA
AGGAGCTTGAAGCCTTCAAAGCTGAACTCGATACAGAGCACACACAGAAGGCCCTGGAAATGGAGCACAC
CCAGCAACTGAAGCTGAAGGAGCGGCAGAAGTTCTTCGAGGAAGCCTTCCAGCAGGACATGGAACAGTAC
CTGTCCACGGGCTACCTGCAGATCGCAGAGAGGCGAGAGCCTATGGGCAGCATGTCATCCATGGAAGTGA
ATGTGGACGTGCTGGAGCAGATGGACCTGATGGACATCTCAGACCAGGAGGCTCTCGATGTCTTCCTGAA
CTCCGGCGGAGAGGACAACATTGTGATGTCCCCTGGTGTGGAGATGGAATCCAACCCCAATCAGAATGAA
ATGAGTCTTCAGATTCCAAGTCCCTCAGAATCAGCATCCCAGCCACCTGCCTCACCCTCTGCCTGCACTG
ACCTGGACACTGCTGATGCCCCCCTCATCCAGTCTGATGAGGAGGAGGTACAGGTGGACACGGCCTTGGT
CACATTACACACTGACAGAAAGTCCACCCCAGGTGTCAGTGATGACAGTGACCAGTGTGACTCAACTCAG
GACATTTAA

Translation (352 aa):
MLETLRERLLSVQQDFTSGLKTLSDKSREAKVKGKPRTAPRLPKYSAGLELLSRYEDAWAALHRRAKECA
DAGELVDSEVVMLSAHWEKKRTSLNELQGQLQQLPALLQDLESLMASLAHLETSFEEVENHLLHLEDLCG
QCELERHKQAQAQHLESYKKSKRKELEAFKAELDTEHTQKALEMEHTQQLKLKERQKFFEEAFQQDMEQY
LSTGYLQIAERREPMGSMSSMEVNVDVLEQMDLMDISDQEALDVFLNSGGEDNIVMSPGVEMESNPNQNE
MSLQIPSPSESASQPPASPSACTDLDTADAPLIQSDEEEVQVDTALVTLHTDRKSTPGVSDDSDQCDSTQ
DI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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