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Report for CCDS23892.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23892.1 Public Mus musculus 10 Ddx50 23 108 98 CCDS HistoryNCBI Gene:94213Re-query CCDS DB by CCDS ID:23892.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23892.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020270.5 ENSMUSP00000020270.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020270.5Link to Ensembl Protein Viewer:ENSMUSP00000020270.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000020270Re-query CCDS DB by Protein ID:ENSMUSP00000020270
Original member Current member NCBI NM_053183.3 NP_444413.1 Accepted alive Link to Nucleotide Sequence:NM_053183.3Link to Protein Sequence:NP_444413.1Re-query CCDS DB by Nucleotide ID:NM_053183Re-query CCDS DB by Protein ID:NP_444413Link to BLAST:NP_444413.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_444413.1 734 Q99MJ9 734 100% 0 0

Chromosomal Locations for CCDS 23892.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 62616238 62616516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 62619585 62619629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 62621389 62621523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 62624768 62624927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 62625145 62625218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 62626163 62626282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 62627521 62627682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 62633977 62634126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 62639861 62640006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 62640447 62640632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 62640745 62640862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 62642776 62642954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 62643297 62643372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 62646914 62647201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 62651025 62651111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2205 nt):
ATGCCCGGGAAACTCCTCTGGGGAGACATAATGGAGCTCGAGGCACCCTTGGAAGAGTCCGAGAGCCAGA
GGAAGGAGCGGCAAAAGAGTGATAGAAGGAAGTCAAGGCACCATTCTGAATCAGAGGAGAGAACAGAAAC
AAGAGAAAATGGTGTTACAGATGACCTGGATGCTCCCAAGCCCAAAAAAGCTAAAATGAGAGAAAAGCTA
AATGGAGACACCAAAGAAGGACTTAGATTTTCAGATGAATTCTCCCCATCTCATAAGTCAAGAAGAAAAG
ACCTGCCAAATGGAGATGTGGATGAGTATGAGAAAAGGTCAAAGCGAGTGTCATCCTCAGAAAACTCTCA
CAAGTCAAGCGATAAAGCAGAGGAGACTCTAACACGTGAACAAAAGGAAGGAGCCTTCTCTAATTTCTCC
ATTTCTGAGGAGACCATAAAGCTTCTGAAAGGTCGAGGGGTAACATATCTCTTTCCTATTCAAGTTAAAA
CCTTTGGTCCTGTATATGAAGGAAAAGATTTAATTGCTCAAGCCCGGACAGGAACAGGAAAGACATTCTC
TTTTGCCATACCCTTGATTGAAAGGCTCCAAAGAAATCAAGAAACAATTAAAAAAAGCCGCTCACCAAAG
GTACTCGTTTTGGCTCCAACAAGGGAATTGGCAAATCAAGTAGCCAAAGATTTCAAAGATATAACTAGAA
AACTCAGTGTGGCGTGTTTTTATGGTGGAACATCATATCAAAGCCAGATTAATCAAATTCGGAATGGTAT
TGACATCCTTGTTGGGACCCCAGGGCGTATCAAAGACCATCTGCAAAGTGGCCGTTTGGATCTTTCAAAG
CTACGCCATGTTGTGCTTGATGAAGTAGATCAAATGTTAGATTTAGGTTTTGCTGAACAAGTCGAAGATA
TTATTCATGAATCTTACAAAACTGATTCGGAAGACAATCCTCAGACCTTACTTTTTTCTGCAACTTGCCC
ACAGTGGGTATACAAAGTTGCAAAAAAATACATGAAATCCAGATACGAACAGGTTGACCTTGTTGGAAAA
ATGACTCAAAAAGCTGCAACCACTGTGGAACATTTGGCTATCCAGTGCCATTGGTCTCAGAGACCAGCAG
TTATTGGAGATGTCCTTCAGGTCTACAGTGGGTCTGAAGGGAGAGCTATTATCTTCTGTGAAACTAAGAA
GAATGTTACTGAAATGGCCATGAATCCACACATAAAGCAGAATGCTCAGTGTTTGCATGGAGACATTGCA
CAGTCACAAAGAGAAATTACCTTGAAAGGCTTCAGAGAAGGTAGTTTTAAAGTTTTGGTAGCAACCAATG
TGGCTGCTCGTGGCTTGGACATTCCTGAGGTTGACCTAGTGATTCAGAGTTCTCCTCCACAGGATGTTGA
ATCCTATATCCATCGCTCTGGACGCACAGGTAGAGCTGGCCGGACAGGAATTTGTGTATGTTTTTATCAA
CCAAGGGAAAGAGGTCAACTGAGATATGTGGAGCAGAAAGCTGGAATTACTTTTAAACGTGTAGGTGTTC
CGTCTACAATGGATTTAGTTAAATCTAAAAGCATGGATGCCATCAGGTCTCTGGCTTCTGTTTCTTATGC
TGCTGTTGATTTTTTCCGACCATCAGCTCAAAGACTGATAGAAGAGAAGGGGGCAGTGGATGCATTGGCT
GCAGCATTAGCTCACATTTCTGGTGCATCAAGCTTTGAACCACGATCTTTGATAACTTCTGATAAGGGGT
TTGTGACCATGACTCTGGAGAGCCCAGAAGAAATACAGGATGTCAGCTGCGCTTGGAAGGAACTTAACAG
AAAGCTCAGTAGTAATGCTGTGTCTCACGTAACCAGAATGTGCCTCCTGAAAGGAAATATGGGTGTTTGC
TTTGATGTTCCTACAAGTGAGTCAGAAAGATTACAGGCAGAGTGGCATGATTCAGACTGGATACTCTCAG
TGCCAGCCAAATTACCTGAAATTGAAGAATATTATGATGGAAACACATCATCTAATCCCAGACAGAGGAG
CGGCTGGTCTGGCGGCAGGTCAGGCCGTTCAGGACGGTCTGGTGGTCGATCTGGTGGCCGATCAGGTAGA
CAGAGTCGACAGGGAAGTCGGTCAGGAAGTCGGCAAGATGGTAGAAGACGAAGTGGGAACAGAAATCGAT
CAAGAAGTGGGGGCCATAAACGGAATTTTGACTGA

Translation (734 aa):
MPGKLLWGDIMELEAPLEESESQRKERQKSDRRKSRHHSESEERTETRENGVTDDLDAPKPKKAKMREKL
NGDTKEGLRFSDEFSPSHKSRRKDLPNGDVDEYEKRSKRVSSSENSHKSSDKAEETLTREQKEGAFSNFS
ISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIERLQRNQETIKKSRSPK
VLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQINQIRNGIDILVGTPGRIKDHLQSGRLDLSK
LRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGK
MTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIA
QSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICVCFYQ
PRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAIRSLASVSYAAVDFFRPSAQRLIEEKGAVDALA
AALAHISGASSFEPRSLITSDKGFVTMTLESPEEIQDVSCAWKELNRKLSSNAVSHVTRMCLLKGNMGVC
FDVPTSESERLQAEWHDSDWILSVPAKLPEIEEYYDGNTSSNPRQRSGWSGGRSGRSGRSGGRSGGRSGR
QSRQGSRSGSRQDGRRRSGNRNRSRSGGHKRNFD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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