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Report for CCDS24832.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24832.1 Public Mus musculus 11 Trim16 23 108 98 CCDS HistoryNCBI Gene:94092Re-query CCDS DB by CCDS ID:24832.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24832.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000055006.11 ENSMUSP00000055542.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000055006.11Link to Ensembl Protein Viewer:ENSMUSP00000055542.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000055006Re-query CCDS DB by Protein ID:ENSMUSP00000055542
Original member Current member NCBI NM_053169.2 NP_444399.2 Accepted alive Link to Nucleotide Sequence:NM_053169.2Link to Protein Sequence:NP_444399.2Re-query CCDS DB by Nucleotide ID:NM_053169Re-query CCDS DB by Protein ID:NP_444399Link to BLAST:NP_444399.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_444399.2 556 Q99PP9-1 556 99.6403% 0 2

Chromosomal Locations for CCDS 24832.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 62820505 62820999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 62829103 62829198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 62833979 62834212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 62836679 62836844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 62837235 62837330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 62840392 62840975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1671 nt):
ATGGCTGAATTGGATCTGATTGCCCCGGGGCCTCTGACCGGGGTCACTGCTCACCCTTTGGCCCCTCTCG
GCCCAGACCCTGTGTCAGCTATCCCAGCAGAAAAAGAAGATGCGGACCCTCTCAGCAAGTCAGGTGAGGA
AACCCAGGAGCAGGGTCATGACCCCGCAGAGGTCGGGGCTCCTGGTGAAGAGGATCAGATCTTGTGTGAC
TTCTGTCTTGGGGCCAGCAGAGTAAGGGCAGTGAAATCCTGTCTGACCTGCATGGTGAACTACTGTGAGG
AGCACCTGCGGCCACACCAGGAGAACAGCAAACTGCACAGCCACCAGCTAACCGAACCCGCAAAGGACCA
GGATCTACGCACCTGCCCTGCCCACCACAGCCCTTTGGTTTCCTTCTGCCACACGCACCAGCAGTGTATC
TGCCAGGAATGCGGGGAGGGTGAACACAGAGGCGACAGTACTGTCTCCCTGGATGCAGCCCGCAGGAACA
AAGAGGTGGACCTTCGGTGTATGCAGTTGGACCTGGAGCAGAAGCTTAAGTTGAATGAAAATGCCATTGC
CAGGCTCCAAGCTAACCATAAGTCTGTTTTGGTGTCGGTGTCAGAGGTGAAGGTGGTAGCTGAAGAGAAG
TTTGGGGAACTCCTCGCAGCTGTACGGAAGGCCCAGGCAGATGTGATGGTCTTCCTAGAGGAGAAAGAAC
AGGCTGCACTGAATCAAGTCAACAGCATCAAAACCCATCTGGAGCACAGGAGCCTCGAGATGGAGAAAAG
CAAGCAGGAGCTGGAGAGGCTGGCCGCCATCAGCAACACTGTGCTGTTCCTGGAGGAGTACTGCAAGCTC
AAGAAGACAGAGGACACTGCCTCCCCTAGCATTTACATAGGGCTGAAGGACAAACTCTCAGGCATCCGCA
AGGTCATCACAGATTCAACTCTGAACTTGATCCAATTGCTAGAAAGCTATAAGGAAAAGCTCCAGGAATT
TTCCAGGGAAGAGGAATATGACATCAGAACTCAAGTGTCTGCCATTGTCCAGCGCAAGTATAGGACCTCG
AAACCTGAGCCCAGAACCCGGGATGAGTTTCTTCAATATGCCTGTGACATCACGTTTGACCCAGACACAG
CACACAGGTACCTTCGCCTGCAGGAGGACAACCGCAAGGTCACCAACACCACGCCCTGGGAACACCCCTA
CCCGGACCTCCCCAGTAGGTTTCTGCACTGGCGGCAGGTGCTGTCCCAACAGAGCCTGTACCTGCACAGA
TATTATTTTGAGGTGGAGCTCTCTGGAGGTGGCACCTATGTTGGCCTGACCTGCAAAGGCATTGACCGTA
AGGGGGAAGAACGGAACAGCTGCATTTCTGGAAATAGCTTCTCCTGGAGCATCCATTGGAATGGGAAGGA
GTTCACAGCCTGGCACAGTGACACAGAGACCCCGCTCAAGGTCAGCCCCTTCAGAAGGCTCGGTATCTAT
GTAAACTTCCCAGGAGGAATCCTTTCCTTCTATGGTGTAGAGTATGATGCTATGACTCTGATTCACAAGT
TTGACTGCAAGTTCTCAGAGCCGGTCTATGCTGCTTTCTGGCTGTCTAAGAAAGAAAACGCCATCCGGAT
TGTGGATCTGGGAGAGGAGCCCGAGAAGCCAGCTGGGTCCTCTGTGGAGGCTGCTCCCTAG

Translation (556 aa):
MAELDLIAPGPLTGVTAHPLAPLGPDPVSAIPAEKEDADPLSKSGEETQEQGHDPAEVGAPGEEDQILCD
FCLGASRVRAVKSCLTCMVNYCEEHLRPHQENSKLHSHQLTEPAKDQDLRTCPAHHSPLVSFCHTHQQCI
CQECGEGEHRGDSTVSLDAARRNKEVDLRCMQLDLEQKLKLNENAIARLQANHKSVLVSVSEVKVVAEEK
FGELLAAVRKAQADVMVFLEEKEQAALNQVNSIKTHLEHRSLEMEKSKQELERLAAISNTVLFLEEYCKL
KKTEDTASPSIYIGLKDKLSGIRKVITDSTLNLIQLLESYKEKLQEFSREEEYDIRTQVSAIVQRKYRTS
KPEPRTRDEFLQYACDITFDPDTAHRYLRLQEDNRKVTNTTPWEHPYPDLPSRFLHWRQVLSQQSLYLHR
YYFEVELSGGGTYVGLTCKGIDRKGEERNSCISGNSFSWSIHWNGKEFTAWHSDTETPLKVSPFRRLGIY
VNFPGGILSFYGVEYDAMTLIHKFDCKFSEPVYAAFWLSKKENAIRIVDLGEEPEKPAGSSVEAAP


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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