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Report for CCDS29183.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29183.1 Public Mus musculus 18 Pcdhb17 23 108 98 CCDS HistoryNCBI Gene:93888Re-query CCDS DB by CCDS ID:29183.1See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29183.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000053856.5 ENSMUSP00000055072.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000053856.5Link to Ensembl Protein Viewer:ENSMUSP00000055072.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000053856Re-query CCDS DB by Protein ID:ENSMUSP00000055072
Original member NCBI NM_053142.3 NP_444372.2 Updated not alive Link to Nucleotide Sequence:NM_053142.3Link to Protein Sequence:NP_444372.2Re-query CCDS DB by Nucleotide ID:NM_053142Re-query CCDS DB by Protein ID:NP_444372
Current member NCBI NM_053142.4 NP_444372.2 Accepted alive Link to Nucleotide Sequence:NM_053142.4Link to Protein Sequence:NP_444372.2Re-query CCDS DB by Nucleotide ID:NM_053142Re-query CCDS DB by Protein ID:NP_444372Link to BLAST:NP_444372.2

Chromosomal Locations for CCDS 29183.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 37485159 37487558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2400 nt):
ATGGAGACTGCATGGATGTGCAATCTGAGACAAAGGCAAGTCCTGGCTTTCTTTGTTTTGCTGCATGTGT
CAGGGGCAGGGGCAGAACTGGGCCCCTATTCCATAGAGGAAGAAACAGAGAGGGGCTCCTTTGTGGCAAA
TCTTGGGAAAGATCTGGGGGTGGACCTGGCAGAGATATCCAATCGCAGGGCTCGGATCATTTCCCAAGAA
AACAAAGAGCATTTGCAGCTCAACCTTCAATCTGGAGATCTGCTCATAAATGAGAAACTGGACCGAGAGG
AGCTATGTGGCCCCATTGAGCCGTGTGTTCTACACTTCCAAGTGTTAATGGAAAACCCTTTAGAGGTATT
TCAGGCTGAACTGAGGGTGATGGACATAAATGACTATTCTCCGGTGTTCAGTGAAAGAGAAATGATACTG
AGAATACTAGAAAACAGTGCTCTGGGAGATACATTTCCTTTAAATAATGCTCTGGACTCAGACGTAGCAA
TCAACAATATCCAGACCTATAGGCTCAGCTCAAACTCTCATTTCCTGGTTGTAACCCGCAACCGCAGTGA
TGGCAGGAAGTACCCAGAGCTGGTGCTGGAGAAAGAACTGGATCGAGAGGAGGAACCTGAGCTGAGGTTA
ACTCTGACAGCTTTGGATGGTGGCGCTCCTCCCCGGTCTGGGACGGCACAGGTTCTCATTGAAGTAGTGG
ACATCAACGATAATGCACCCAAGTTTCAGCAGCCAACATACCGAGTGCAAATTCCCGAGAACAGTCCCAC
CGGTTCTCTGGTACTCACAGTCTCAGCCAATGACTTGGACAGTGGAGATTATGGAAAAGTATTGTATGCA
CTTTCTCAGCCTTCAGAAGATATTAGCAAAACGTTAGAAGTAAACCCTGTAACCGGGGAGATTCGGCTAC
GAAAAGAGGTGGATTTTGAAACTATTCCCTCTTATGAAGTGGATATCAAGGCCACGGATGGGGGAGGTCT
CTCAGGAAAATGCACGCTGTTACTGAAGGTGGTGGACGTGAATGACAATGCCCCAGAAGTGATGCTATCT
GCTCTTACCAGCCCAGTCCCAGAAAACTCCCCGGACGAGGTAGTTGCTGTTTTCAGTGTTAAAGATCCTG
ATTCAGCGAACAATGGAAAAATGATTGCCTCCATCGAAGAAGATCTTCCCTTTCTTCTAAAATCTTCAGG
GAAGAACTTTTACACTTTAGTGACCAAGAGAGCACTTGACAGGGAAGAAAGAGAGAAATACAACATCACC
ATCACTGTCTCTGACCTGGGCACACCCAGGCTCACAACCCAGCACACCATAACAGTGCAGGTCTCTGACA
CCAATGACAACGCCCCCGCCTTCAACCAAACCTCATACACCCTGTTCGTCCGCGAGAACAACAGCCCCGC
CATGCACATAGGCACCATCAGTGCCACAGACTCTGACGCTGGCTCCAATTCCCACATCAGCTACTCGCTG
TTGCCTTCCCACGACCCGCAGCTGGCCCTGGACTCGCTCATCTCCATCAACGCAGACAATGGGCAGCTGT
TCGCGCTCAGGGCGCTGGACTATGAGGCCCTGCAGGCCTTTGAGTTCCACGTGGGTGCAATAGACCAAGG
CTCACCTGCGCTCAGCAGCCAAGCGCTGGTGCGCGTGGTGGTGCTGGACGACAATGACAATGCGCCCTTC
GTGCTCTACCCGATGCAGAACTCCTCTGCGCCTTGCACAGAACTGCTGCCCAGGGCGGCGGAACCCGGAT
ACCTGGTCACCAAGGTGGTGGCTGTGGATCGCGACTCTGGCCAGAATGCCTGGCTGTCATTCCAACTTCT
CAAGGCTACGGAGCCCGGGCTGTTCAGCGTGTGGGCGCACAATGGCGAGGTACGCACTACCAGACTGCTG
AGCGAGCGCGATGTGCCCAAGCACAGGCTGGTCCTGCTGGTCAAGGACAATGGCGATCCTCCGCGCTCTG
CCAGCGTCACGCTGCACGTGCTAGTGGTGGATGGCTTCTCTCAGCCCTACCTGCCTCTGCCAGAGGTGGC
GCGCAATCCCGCGCACGATGAGGACGCTCTAACACTGTATCTGGTCATAGCCTTGGCATCTGTGTCTTCT
CTCTTCCTCTTGTCTGTGCTGCTGTTTGTGGGGGTGAGGCTGTGCAGGAGGGCCAGGTCGGCCTCTCTGA
GTGGTTATTCCGTGCCTGAGGGCCACATTCCTGGCCATCTGGTGGATGTCAGAGGTGTGGGGACCCTGTC
CCAGAGCTACCAGTATGATGTATGTCTGATGGGCGATTCTTCTGGGACCAGTGAGTTTAACTTCTTAAAG
CCAGTTTTCCCTAGCTCTCTAGACCAGTGCTCTGGTAAAGAAATAGAGGAAAATTCCTCACTCCACAATA
GTTTTGGATTTCATCATTAA

Translation (799 aa):
METAWMCNLRQRQVLAFFVLLHVSGAGAELGPYSIEEETERGSFVANLGKDLGVDLAEISNRRARIISQE
NKEHLQLNLQSGDLLINEKLDREELCGPIEPCVLHFQVLMENPLEVFQAELRVMDINDYSPVFSEREMIL
RILENSALGDTFPLNNALDSDVAINNIQTYRLSSNSHFLVVTRNRSDGRKYPELVLEKELDREEEPELRL
TLTALDGGAPPRSGTAQVLIEVVDINDNAPKFQQPTYRVQIPENSPTGSLVLTVSANDLDSGDYGKVLYA
LSQPSEDISKTLEVNPVTGEIRLRKEVDFETIPSYEVDIKATDGGGLSGKCTLLLKVVDVNDNAPEVMLS
ALTSPVPENSPDEVVAVFSVKDPDSANNGKMIASIEEDLPFLLKSSGKNFYTLVTKRALDREEREKYNIT
ITVSDLGTPRLTTQHTITVQVSDTNDNAPAFNQTSYTLFVRENNSPAMHIGTISATDSDAGSNSHISYSL
LPSHDPQLALDSLISINADNGQLFALRALDYEALQAFEFHVGAIDQGSPALSSQALVRVVVLDDNDNAPF
VLYPMQNSSAPCTELLPRAAEPGYLVTKVVAVDRDSGQNAWLSFQLLKATEPGLFSVWAHNGEVRTTRLL
SERDVPKHRLVLLVKDNGDPPRSASVTLHVLVVDGFSQPYLPLPEVARNPAHDEDALTLYLVIALASVSS
LFLLSVLLFVGVRLCRRARSASLSGYSVPEGHIPGHLVDVRGVGTLSQSYQYDVCLMGDSSGTSEFNFLK
PVFPSSLDQCSGKEIEENSSLHNSFGFHH


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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