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Report for CCDS2315.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2315.1 Public Homo sapiens 2 STK17B 24 110 108 CCDS HistoryNCBI Gene:9262Re-query CCDS DB by CCDS ID:2315.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2315.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000263955.9 ENSP00000263955.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000263955.9Link to Ensembl Protein Viewer:ENSP00000263955.4Re-query CCDS DB by Nucleotide ID:ENST00000263955Re-query CCDS DB by Protein ID:ENSP00000263955
Original member Current member EBI ENST00000409228.5 ENSP00000386853.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000409228.5Link to Ensembl Protein Viewer:ENSP00000386853.1Re-query CCDS DB by Nucleotide ID:ENST00000409228Re-query CCDS DB by Protein ID:ENSP00000386853
Original member Current member NCBI NM_004226.4 NP_004217.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004226.4Link to Protein Sequence:NP_004217.1Re-query CCDS DB by Nucleotide ID:NM_004226Re-query CCDS DB by Protein ID:NP_004217Link to BLAST:NP_004217.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004217.1 372 O94768 372 100% 0 0

Chromosomal Locations for CCDS 2315.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 196137447 196137729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 196139620 196139799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 196141249 196141297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 196143560 196143686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 196145911 196146055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 196156439 196156651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 196163262 196163383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1119 nt):
ATGTCGAGGAGGAGATTTGATTGCCGAAGTATTTCAGGCCTACTAACTACAACTCCTCAAATTCCAATAA
AAATGGAAAACTTTAATAATTTCTATATACTTACATCTAAAGAGCTAGGGAGAGGAAAATTTGCTGTGGT
TAGACAATGTATATCAAAATCTACTGGCCAAGAATATGCTGCAAAATTTCTAAAAAAGAGAAGAAGAGGA
CAGGATTGTCGAGCAGAAATTTTACACGAGATTGCTGTGCTTGAATTGGCAAAGTCTTGTCCCCGTGTTA
TTAATCTTCATGAGGTCTATGAAAATACAAGTGAAATCATTTTGATATTGGAATATGCTGCAGGTGGAGA
AATTTTCAGCCTGTGTTTACCTGAGTTGGCTGAAATGGTTTCTGAAAATGATGTTATCAGACTCATTAAA
CAAATACTTGAAGGAGTTTATTATCTACATCAGAATAACATTGTACACCTTGATTTAAAGCCACAGAATA
TATTACTGAGCAGCATATACCCTCTCGGGGACATTAAAATAGTAGATTTTGGAATGTCTCGAAAAATAGG
GCATGCGTGTGAACTTCGGGAAATCATGGGAACACCAGAATATTTAGCTCCAGAAATCCTGAACTATGAT
CCCATTACCACAGCAACAGATATGTGGAATATTGGTATAATAGCATATATGTTGTTAACTCACACATCAC
CATTTGTGGGAGAAGATAATCAAGAAACATACCTCAATATTTCTCAAGTTAATGTAGATTATTCGGAAGA
AACTTTTTCATCAGTTTCACAGCTGGCCACAGACTTTATTCAGAGCCTTTTAGTAAAAAATCCAGAGAAA
AGACCAACAGCAGAGATATGCCTTTCTCATTCTTGGCTACAGCAGTGGGACTTTGAAAACTTGTTTCACC
CTGAAGAAACTTCCAGTTCCTCTCAAACTCAGGATCATTCTGTAAGGTCCTCTGAAGACAAGACTTCTAA
ATCCTCCTGTAATGGAACCTGTGGTGATAGAGAAGACAAAGAGAATATCCCAGAGGATAGCAGCATGGTT
TCCAAAAGATTTCGTTTCGATGACTCATTACCCAATCCCCATGAACTTGTTTCAGATTTGCTCTGTTAG

Translation (372 aa):
MSRRRFDCRSISGLLTTTPQIPIKMENFNNFYILTSKELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRG
QDCRAEILHEIAVLELAKSCPRVINLHEVYENTSEIILILEYAAGGEIFSLCLPELAEMVSENDVIRLIK
QILEGVYYLHQNNIVHLDLKPQNILLSSIYPLGDIKIVDFGMSRKIGHACELREIMGTPEYLAPEILNYD
PITTATDMWNIGIIAYMLLTHTSPFVGEDNQETYLNISQVNVDYSEETFSSVSQLATDFIQSLLVKNPEK
RPTAEICLSHSWLQQWDFENLFHPEETSSSSQTQDHSVRSSEDKTSKSSCNGTCGDREDKENIPEDSSMV
SKRFRFDDSLPNPHELVSDLLC


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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