NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS5159.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5159.1 Public Homo sapiens 6 VNN1 24 110 108 CCDS HistoryNCBI Gene:8876Re-query CCDS DB by CCDS ID:5159.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5159.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000367928.5 ENSP00000356905.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000367928.5Link to Ensembl Protein Viewer:ENSP00000356905.4Re-query CCDS DB by Nucleotide ID:ENST00000367928Re-query CCDS DB by Protein ID:ENSP00000356905
Original member Current member NCBI NM_004666.3 NP_004657.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004666.3Link to Protein Sequence:NP_004657.2Re-query CCDS DB by Nucleotide ID:NM_004666Re-query CCDS DB by Protein ID:NP_004657Link to BLAST:NP_004657.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004657.2 513 O95497 513 100% 0 0

Chromosomal Locations for CCDS 5159.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 132683140 132683322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 132684335 132684505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 132692223 132692584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 132693024 132693315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 132693990 132694182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 132711709 132711839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 132713826 132714035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1542 nt):
ATGACTACTCAGTTGCCAGCTTACGTGGCAATTTTGCTTTTCTATGTCTCAAGAGCCAGCTGCCAGGACA
CTTTCACTGCAGCTGTTTATGAGCATGCAGCGATATTGCCCAATGCCACCCTAACACCAGTGTCTCGTGA
GGAGGCTTTGGCATTAATGAATCGGAATCTGGACATTTTGGAAGGAGCGATCACATCAGCAGCAGATCAG
GGTGCGCATATTATTGTGACTCCAGAAGATGCTATTTATGGCTGGAACTTCAACAGGGACTCTCTCTACC
CATATTTGGAGGACATCCCAGACCCTGAAGTAAACTGGATCCCCTGTAATAATCGTAACAGATTTGGCCA
GACCCCAGTACAAGAAAGACTCAGCTGCCTGGCCAAGAACAACTCTATCTATGTTGTGGCAAATATTGGG
GACAAGAAGCCATGCGATACCAGTGATCCTCAGTGTCCCCCTGATGGCCGTTACCAATACAACACTGATG
TGGTATTTGATTCTCAAGGAAAACTGGTGGCACGCTACCATAAGCAAAACCTTTTCATGGGTGAAAATCA
ATTCAATGTACCCAAGGAGCCTGAGATTGTGACTTTCAATACCACCTTTGGAAGTTTTGGCATTTTCACA
TGCTTTGATATACTCTTCCATGATCCTGCTGTTACCTTGGTGAAAGATTTCCACGTGGACACCATAGTAT
TCCCAACAGCTTGGATGAATGTTTTGCCACATTTGTCAGCTGTTGAATTCCACTCAGCTTGGGCTATGGG
CATGAGGGTCAATTTCCTTGCATCCAACATACATTACCCCTCAAAGAAAATGACAGGAAGTGGCATCTAT
GCACCCAATTCTTCAAGAGCATTTCATTATGATATGAAGACAGAAGAGGGAAAACTCCTCCTCTCGCAAC
TGGATTCCCACCCATCCCATTCTGCAGTGGTGAACTGGACTTCCTATGCCAGCAGTATAGAAGCGCTCTC
ATCAGGAAACAAGGAATTTAAAGGCACTGTCTTTTTCGATGAATTCACTTTTGTGAAGCTCACAGGAGTT
GCAGGAAATTATACAGTTTGTCAGAAAGATCTCTGCTGTCATTTAAGCTACAAAATGTCTGAGAACATAC
CAAATGAAGTGTACGCTCTAGGGGCATTTGACGGACTGCACACTGTGGAAGGGCGCTATTATCTACAGAT
TTGTACCCTGTTGAAATGTAAAACGACTAATTTAAACACTTGCGGTGACTCAGCTGAAACAGCTTCTACC
AGGTTTGAAATGTTCTCCCTCAGTGGCACTTTCGGAACCCAGTATGTCTTTCCTGAGGTGTTGCTGAGTG
AAAATCAGCTTGCACCTGGAGAATTTCAGGTGTCAACTGACGGACGCTTGTTTAGTCTGAAGCCAACATC
CGGACCTGTCTTAACAGTAACTCTGTTTGGGAGGTTGTATGAGAAGGACTGGGCATCAAATGCTTCATCA
GGCCTCACAGCACAAGCAAGAATAATAATGCTAATAGTTATAGCACCTATTGTATGCTCATTAAGTTGGT
AG

Translation (513 aa):
MTTQLPAYVAILLFYVSRASCQDTFTAAVYEHAAILPNATLTPVSREEALALMNRNLDILEGAITSAADQ
GAHIIVTPEDAIYGWNFNRDSLYPYLEDIPDPEVNWIPCNNRNRFGQTPVQERLSCLAKNNSIYVVANIG
DKKPCDTSDPQCPPDGRYQYNTDVVFDSQGKLVARYHKQNLFMGENQFNVPKEPEIVTFNTTFGSFGIFT
CFDILFHDPAVTLVKDFHVDTIVFPTAWMNVLPHLSAVEFHSAWAMGMRVNFLASNIHYPSKKMTGSGIY
APNSSRAFHYDMKTEEGKLLLSQLDSHPSHSAVVNWTSYASSIEALSSGNKEFKGTVFFDEFTFVKLTGV
AGNYTVCQKDLCCHLSYKMSENIPNEVYALGAFDGLHTVEGRYYLQICTLLKCKTTNLNTCGDSAETAST
RFEMFSLSGTFGTQYVFPEVLLSENQLAPGEFQVSTDGRLFSLKPTSGPVLTVTLFGRLYEKDWASNASS
GLTAQARIIMLIVIAPIVCSLSW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH