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Report for CCDS12241.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12241.1 Public Homo sapiens 19 ATG4D 24 110 108 CCDS HistoryNCBI Gene:84971Re-query CCDS DB by CCDS ID:12241.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12241.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000309469.9 ENSP00000311318.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000309469.9Link to Ensembl Protein Viewer:ENSP00000311318.3Re-query CCDS DB by Nucleotide ID:ENST00000309469Re-query CCDS DB by Protein ID:ENSP00000311318
Original member Current member NCBI NM_032885.6 NP_116274.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032885.6Link to Protein Sequence:NP_116274.3Re-query CCDS DB by Nucleotide ID:NM_032885Re-query CCDS DB by Protein ID:NP_116274Link to BLAST:NP_116274.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_116274.3 474 Q86TL0-1 474 100% 0 0

Chromosomal Locations for CCDS 12241.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 10544091 10544325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10544783 10544866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10544957 10545130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10546839 10547115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10547189 10547253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10548904 10549034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10551897 10551975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10552045 10552121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10552205 10552324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10552885 10553067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1425 nt):
ATGAACTCAGTGTCGCCGGCCGCCGCGCAGTACCGGAGCAGCAGCCCGGAGGACGCGCGCCGCCGGCCCG
AGGCCCGCAGGCCGCGGGGTCCCAGAGGCCCAGACCCCAACGGCCTGGGGCCTTCCGGAGCCAGCGGCCC
CGCTCTTGGCTCTCCCGGGGCTGGCCCGAGTGAGCCGGACGAAGTGGACAAGTTCAAGGCCAAGTTCCTG
ACAGCCTGGAACAACGTCAAGTACGGTTGGGTGGTTAAAAGCCGGACCAGCTTTAGCAAGATCTCCAGCA
TCCACCTCTGTGGCCGCCGCTACCGTTTCGAGGGCGAGGGTGACATACAGCGTTTCCAGCGGGACTTTGT
GTCCCGCCTGTGGCTCACATACCGCCGGGACTTCCCGCCCCTTCCTGGGGGCTGCCTGACCTCGGACTGT
GGCTGGGGGTGCATGTTACGCAGCGGCCAGATGATGCTGGCACAGGGCCTTCTGCTGCATTTCCTGCCCA
GAGACTGGACATGGGCCGAGGGCATGGGCCTGGGCCCCCCTGAGCTGTCAGGGTCAGCCTCTCCCAGCCG
GTACCATGGGCCTGCCCGCTGGATGCCCCCACGCTGGGCCCAGGGTGCCCCTGAGCTGGAGCAGGAACGC
CGGCACCGGCAGATTGTGTCCTGGTTCGCCGACCACCCCCGGGCCCCCTTTGGCCTACACCGGCTGGTGG
AGCTTGGGCAGAGCTCAGGCAAGAAGGCAGGTGACTGGTATGGGCCATCGCTAGTGGCACACATCCTCAG
GAAAGCCGTGGAGAGCTGCTCCGACGTCACCCGCCTGGTGGTGTACGTTTCTCAGGACTGCACAGTGTAC
AAGGCGGATGTGGCACGCCTGGTGGCCAGGCCAGACCCCACAGCCGAGTGGAAGTCTGTGGTCATCCTGG
TGCCCGTGCGACTGGGTGGCGAGACTCTCAACCCCGTGTATGTGCCCTGCGTGAAGGAACTCCTGCGTTG
CGAGCTGTGCCTGGGCATCATGGGTGGGAAACCGCGACACTCACTGTACTTCATTGGCTACCAAGATGAC
TTCCTGCTGTACCTGGACCCTCACTACTGCCAGCCCACTGTGGATGTCAGCCAGGCCGACTTCCCCCTGG
AGTCCTTCCACTGCACCTCGCCCCGCAAGATGGCCTTTGCCAAGATGGACCCAAGCTGTACCGTGGGCTT
CTATGCTGGAGACAGGAAGGAGTTTGAGACACTCTGCTCAGAGCTGACCAGGGTCCTCAGCTCCTCCTCA
GCCACAGAGCGGTACCCCATGTTCACCCTGGCCGAGGGCCATGCTCAGGACCACAGCCTGGACGACCTCT
GCTCCCAGCTCGCCCAGCCCACACTCCGGCTCCCTCGCACAGGGCGGCTCCTCAGGGCCAAACGCCCCAG
CTCTGAGGACTTTGTGTTTTTATAA

Translation (474 aa):
MNSVSPAAAQYRSSSPEDARRRPEARRPRGPRGPDPNGLGPSGASGPALGSPGAGPSEPDEVDKFKAKFL
TAWNNVKYGWVVKSRTSFSKISSIHLCGRRYRFEGEGDIQRFQRDFVSRLWLTYRRDFPPLPGGCLTSDC
GWGCMLRSGQMMLAQGLLLHFLPRDWTWAEGMGLGPPELSGSASPSRYHGPARWMPPRWAQGAPELEQER
RHRQIVSWFADHPRAPFGLHRLVELGQSSGKKAGDWYGPSLVAHILRKAVESCSDVTRLVVYVSQDCTVY
KADVARLVARPDPTAEWKSVVILVPVRLGGETLNPVYVPCVKELLRCELCLGIMGGKPRHSLYFIGYQDD
FLLYLDPHYCQPTVDVSQADFPLESFHCTSPRKMAFAKMDPSCTVGFYAGDRKEFETLCSELTRVLSSSS
ATERYPMFTLAEGHAQDHSLDDLCSQLAQPTLRLPRTGRLLRAKRPSSEDFVFL


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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