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Report for CCDS4216.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4216.1 Public Homo sapiens 5 PSD2 24 110 108 CCDS HistoryNCBI Gene:84249Re-query CCDS DB by CCDS ID:4216.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4216.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000274710.4 ENSP00000274710.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000274710.4Link to Ensembl Protein Viewer:ENSP00000274710.3Re-query CCDS DB by Nucleotide ID:ENST00000274710Re-query CCDS DB by Protein ID:ENSP00000274710
Original member Current member NCBI NM_032289.4 NP_115665.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032289.4Link to Protein Sequence:NP_115665.1Re-query CCDS DB by Nucleotide ID:NM_032289Re-query CCDS DB by Protein ID:NP_115665Link to BLAST:NP_115665.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_115665.1 771 Q9BQI7 771 100% 0 0

Chromosomal Locations for CCDS 4216.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 139809441 139809811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139813309 139813758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139814170 139814364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139817481 139817561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139821893 139822005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139822726 139822784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139833702 139833791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139835723 139835766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139836811 139837001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139837168 139837238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139837625 139837782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139838628 139838772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139840027 139840170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139842271 139842474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2316 nt):
ATGGAGGAGGACAAGCTCTTATCTGCAGTGCCTGAGGAAGGCGATGCCACCCGTGACCCCGGTCCAGAGC
CTGAAGAGGAGCCAGGGGTCCGGAATGGGATGGCCAGTGAGGGCCTGAACAGCAGCCTCTGCAGCCCAGG
GCACGAGCGAAGGGGCACCCCAGCGGACACTGAGGAACCCACGAAGGACCCAGATGTGGCCTTCCATGGC
CTCAGCCTTGGCCTCTCTCTCACCAATGGCCTAGCCCTGGGGCCAGACTTGAACATTCTGGAAGATTCAG
CGGAGTCCAGGCCCTGGAGGGCTGGCGTGCTGGCAGAGGGGGACAATGCTTCCAGGAGCCTCTACCCAGA
TGCTGAGGACCCTCAGCTGGGGTTGGATGGTCCCGGGGAGCCAGATGTGCGGGATGGCTTCAGCGCCACG
TTTGAGAAGATTCTGGAGTCAGAGCTGCTGCGGGGCACCCAGTACAGCAGCCTCGACTCCCTAGACGGGC
TGAGCCTCACGGATGAGAGCGACAGCTGCGTCAGCTTCGAGGCCCCCCTCACACCCCTCATCCAGCAGCG
GGCCCGTGACAGCCCTGAGCCAGGGGCTGGGTTGGGCATTGGGGACATGGCGTTTGAGGGGGACATGGGG
GCAGCTGGTGGTGATGGGGAGCTGGGCAGCCCCCTGCGGCGCTCCATCTCCAGCAGCCGCTCTGAGAATG
TCCTGAGCCGCCTGTCTCTCATGGCCATGCCCAATGGATTCCATGAAGATGGCCCTCAGGGCCCAGGGGG
GGATGAGGATGATGATGAGGAGGACACGGACAAGTTGCTGAACTCAGCCAGTGACCCCAGCCTGAAGGAT
GGCCTGTCAGACTCAGACTCTGAGCTCAGCAGCTCGGAGGGGTTGGAGCCTGGTAGTGCAGACCCTCTGG
CCAACGGGTGCCAGGGGGTCAGTGAAGCTGCTCATCGGCTGGCACGCCGTCTCTACCACCTCGAGGGCTT
CCAGCGCTGTGATGTGGCCCGGCAGCTGGGCAAGAACAACGAGTTTAGCAGGCTGGTGGCCGGGGAGTAC
CTCAGTTTCTTCGACTTCTCGGGCTTGACTCTGGACGGAGCACTCAGAACATTCTTGAAGGCCTTCCCGC
TGATGGGGGAGACACAAGAGCGTGAGCGGGTCCTCACACACTTCTCCCGCCGGTACTGCCAGTGCAACCC
TGATGACAGCACTTCGGAAGATGGGATCCACACGCTCACCTGTGCCCTGATGCTGCTCAACACGGACCTG
CACGGCCACAACATTGGCAAAAAGATGTCCTGTCAGCAATTCATTGCCAACTTGGACCAGCTGAATGATG
GCCAAGACTTTGCCAAAGACCTGCTGAAGACCCTTTACAACTCCATCAAGAATGAAAAGCTGGAATGGGC
CATTGATGAGGATGAGCTGAGGAAATCCCTGTCTGAGCTGGTGGATGACAAGTTCGGGACAGGCACGAAG
AAGGTGACGCGAATCCTGGATGGTGGCAACCCCTTCCTGGATGTCCCACAGGCGCTCAGTGCCACCACCT
ACAAGCACGGCGTCCTGACCCGGAAGACTCACGCTGACATGGATGGCAAGAGGACGCCCCGTGGGAGGCG
TGGCTGGAAGAAATTCTACGCAGTGCTCAAAGGGACCATCCTGTACCTGCAGAAGGATGAGTACAGGCCT
GACAAAGCTCTATCGGAGGGTGACCTGAAGAACGCCATTCGCGTGCATCACGCTCTGGCCACCAGGGCCT
CTGACTACAGCAAGAAGTCCAACGTGCTGAAGCTTAAGACAGCCGACTGGAGGGTATTCCTCTTCCAGGC
ACCGAGCAAGGAAGAAATGCTGTCCTGGATCCTCAGGATCAACCTGGTGGCAGCCATCTTCTCTGCCCCG
GCCTTCCCAGCCGCTGTCAGCTCCATGAAGAAGTTCTGTCGGCCCCTGCTGCCCTCCTGCACCACCCGCC
TCTGCCAGGAGGAGCAACTGCGGTCTCATGAGAATAAGTTGAGGCAGCTGACTGCGGAGCTGGCCGAACA
CAGGTGTCACCCAGTCGAGAGGGGCATCAAGTCCAAGGAGGCCGAGGAGTACCGGTTGAAGGAGCACTAT
CTCACCTTCGAGAAAAGCCGTTATGAGACCTATATCCACCTCCTGGCTATGAAAATCAAAGTGGGCTCAG
ATGATCTGGAGCGGATTGAGGCCCGGCTGGCCACTCTGGAAGGGGATGACCCTTCTCTCCGGAAGACACA
TTCAAGCCCTGCCCTCAGCCAGGGCCATGTGACTGGCAGCAAAACCACAAAGGATGCCACTGGGCCTGAT
ACTTAG

Translation (771 aa):
MEEDKLLSAVPEEGDATRDPGPEPEEEPGVRNGMASEGLNSSLCSPGHERRGTPADTEEPTKDPDVAFHG
LSLGLSLTNGLALGPDLNILEDSAESRPWRAGVLAEGDNASRSLYPDAEDPQLGLDGPGEPDVRDGFSAT
FEKILESELLRGTQYSSLDSLDGLSLTDESDSCVSFEAPLTPLIQQRARDSPEPGAGLGIGDMAFEGDMG
AAGGDGELGSPLRRSISSSRSENVLSRLSLMAMPNGFHEDGPQGPGGDEDDDEEDTDKLLNSASDPSLKD
GLSDSDSELSSSEGLEPGSADPLANGCQGVSEAAHRLARRLYHLEGFQRCDVARQLGKNNEFSRLVAGEY
LSFFDFSGLTLDGALRTFLKAFPLMGETQERERVLTHFSRRYCQCNPDDSTSEDGIHTLTCALMLLNTDL
HGHNIGKKMSCQQFIANLDQLNDGQDFAKDLLKTLYNSIKNEKLEWAIDEDELRKSLSELVDDKFGTGTK
KVTRILDGGNPFLDVPQALSATTYKHGVLTRKTHADMDGKRTPRGRRGWKKFYAVLKGTILYLQKDEYRP
DKALSEGDLKNAIRVHHALATRASDYSKKSNVLKLKTADWRVFLFQAPSKEEMLSWILRINLVAAIFSAP
AFPAAVSSMKKFCRPLLPSCTTRLCQEEQLRSHENKLRQLTAELAEHRCHPVERGIKSKEAEEYRLKEHY
LTFEKSRYETYIHLLAMKIKVGSDDLERIEARLATLEGDDPSLRKTHSSPALSQGHVTGSKTTKDATGPD
T


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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