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Report for CCDS19237.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19237.1 Public Mus musculus 5 Sorcs2 23 108 98 CCDS HistoryNCBI Gene:81840Re-query CCDS DB by CCDS ID:19237.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19237.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000037370.13 ENSMUSP00000041828.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000037370.13Link to Ensembl Protein Viewer:ENSMUSP00000041828.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000037370Re-query CCDS DB by Protein ID:ENSMUSP00000041828
Original member Current member NCBI NM_030889.2 NP_112151.2 Accepted alive Link to Nucleotide Sequence:NM_030889.2Link to Protein Sequence:NP_112151.2Re-query CCDS DB by Nucleotide ID:NM_030889Re-query CCDS DB by Protein ID:NP_112151Link to BLAST:NP_112151.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_112151.2 1159 Q9EPR5 1159 100% 0 0

Chromosomal Locations for CCDS 19237.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 36019328 36019392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 36021229 36021332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 36023992 36024094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 36024567 36024666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 36025820 36025945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 36026659 36026771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 36027862 36027985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 36029052 36029185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 36031152 36031338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 36035697 36035868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 36037406 36037534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 36038121 36038254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 36039311 36039431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 36042092 36042199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 36043443 36043534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 36046482 36046558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 36047801 36047903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 36050448 36050594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 36055970 36056149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 36062538 36062627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 36065339 36065457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 36068088 36068152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 36071326 36071399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 36077874 36078038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 36153823 36153922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 36229145 36229212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 36397566 36398045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3480 nt):
ATGGCGCACCGGGGACCCCCGAGCGCCCCGAAGCGTCCTGGCCCTACTGCGCCGGACCGGAGCTTTCAGG
CTCTGCTGCCGCCGTGCTGGCCACGTTCGTGGCCGCTGCTGCTGCTGCTGCTGGTGCTGGTGGCTGCCTG
CGGAGCGATGGGGCGCTCCCCCCAGCCCGGGCGCCAGGGTCCCGGTGTGCAGATCACTAGGCTGCTGCCC
GCGGGACGCACGGAGTCCGGCGATCGCAAAGATCCACAGGCACGAGAATCAGAACCCAGCGTCCCGGGTC
TCGGTCCGGGTTCTGCTTCGGGTCCCAGCACCGATGGCGCCCCAGCTCCGGGCAAGGGGCGCAGGGCTCG
GGCGGTGCCGGTGGCCGGTGCGGCTTCGGCTTCGCGCGCACAGGTCTCGCTCATCAGCACGTCGTTCGTG
CTCAAGGGAGACGCGACGCACAACCAGGCGATGGTACACTGGACAGGAGAGAACAGCAGCGTCATCTTGA
TCCTGACAAAGTACTACCATGCAGACATGGGCAAGGTTCTGGAAAGTTCTCTGTGGAGGTCCTCAGATTT
TGGGACAACCTACACCAAGCTTACTCTCCAGCCTGGTGTCACCACTGTCATTGACAACTTCTATATCTGC
CCAGCTAACAAAAGGAAGATCATCCTGGTGAGCTCATCCCTCGGTGACCGGGAACAGAGCCTCTTCCTCA
GCACTGATGAGGGCGCCACGTTCCAGAAGTATCCTGTCCCCTTCCTTGTGGAGATGCTCCTCTTCCACCC
GAAGGAGGAGGACAAGGTGCTGGCCTACACCAAGGACAGCAAGCTGTATGTGTCATCGGACCTGGGAAAG
AAGTGGACACTTCTGCAGGAACGGGTGACCAAGGACCACGTGTTCTGGGCTGTGTCTGGGGTGGATGACG
ACCCAAACTTGGTCCACGTGGAAGCTCAGGACCTCAGTGGAGGCTATCGGTACTACACGTGTCTGATCTA
CAACTGCTCAGCCCAGCCACACATAGCACCCTTCTCCGGCCCCATTGACCGCGGGTCCCTGACCGTGCAG
GATGAGTACATCTTTTTGAAGGCAACATCAACAAACCGAACCAAGTACTATGTCTCCTATCGCCGAAGTG
ACTTTGTCCTGATGAAGCTGCCCAAGTATGCCCTGCCCAAGGACCTACAGATCATCAGCACGGATGAGCA
GCAGGTGTTTGTGGCCGTACAGGAGTGGAACCAGGTAGACACCTACAACCTGTACCAGTCAGACCTGCGT
GGGGTTCGCTATTCCCTGGTGCTGGAGAATGTGCGCAGCTCGAGGCAAGCCGAGGAGAACGTGGTCATCG
ACATCCTTGAGGTCAGAGGGGTGAAGGGAGTCTTCTTGGCAAACCAGAAAGTGGATGGCAAGGTGACCAC
AGTCATAACCTACAACAAGGGCCGTGACTGGGATTACCTGAGGCCACCCAGCACCGACATGAATGGGAAG
CCCACCAACTGCCAGCCGCCGGACTGTTACCTGCACCTGCACTTGCGGTGGGCAGACAACCCCTATGTGT
CAGGCACGGTACACACCAAGGACACTGCCCCTGGTCTCATCATGGGTGCAGGTAACCTGGGCTCACAGCT
GGTGGAGTATAAAGAGGAGATGTACATCACATCTGACTGCGGGCACACCTGGAGGCAGGTCTTTGAGGAA
GAGCACCATGTGTTGTACCTGGACCACGGTGGTGTCATTGCCGCCATCAAGGACACCTCCATCCCCCTGA
AGATCCTCAAGTTCAGCGTGGATGAGGGCCACACGTGGAGCACACACAACTTCACCAGCACCTCAGTGTT
CGTGGATGGGTTGCTGAGCGAGCCAGGGGATGAGACGCTGGTCATGACGGTCTTTGGTCACATCAGCTTC
CGCTCTGACTGGGAGCTGGTCAAGGTTGACTTCCGGCCCTCCTTCCCCCGGCAGTGTGGCGAGGATGACT
ACAGCTCCTGGGACCTCACTGACCTCCAGGGTGATCACTGCATCATGGGCCAACAGAGAAGTTACCGGAA
GAGAAAGTCCACATCCTGGTGTGTCAAGGGACGGAGCTTCACATCAGCACTCACGTCACGTGTGTGCAAG
TGCCGGGACTCCGACTTCCTCTGTGACTACGGGTTTGAGCGCTCATCTTCCTCGGAGTCCACTGCCAACA
AGTGCTCTGCCAACTTCTGGTTCAACCCTTTGTCTCCTCCTGAAGACTGTGTCTTGGGTCAGACTTACAC
TAGTAGCCTTGGGTACCGGAAGGTGGTGTCCAATGTGTGTGAAGGTGGTGTGGACCTGCAGCAGAGCCCA
GTGCAGCTGCAGTGCCCCCTCCAGGCACCCCGGGGCCTGCAGGTGAGCATCCGAGGAGAGGCAGTGGCCG
TGCGGCCTAGAGAAGATGTGCTGTTTGTGGTGCGACAGGAACAGGGTGATGTCCTGACCACTAAATATCA
GGTGGATCTTGGGGATGGCTTCAAGGCCATGTACGTGAACCTCACTCTGACAGGCGAGCCCATTCGACAT
CACTATGAGAGTCCTGGCATCTACCGAGTGTCCGTCAGGGCTGAGAACATGGCAGGCCATGATGAGGCTG
TGCTCTTTGTCCAGGTCAACTCTCCCCTGCAGGCCCTCTACCTCGAGGTAGTTCCTGTCATTGGCGTCAA
CCAGGAGGTGAACCTCACAGCCGTGCTGTTACCCCTGAATCCCAACCTCACTGTCTTCTACTGGTGGATC
GGCCACAGCTTGCAGCCTCTGCTTTCCTTGGACAACTCGGTGACAACAAAGTTTACGGACGCTGGGGATG
TGCGTGTGACAGTGCAAGCTGCCTGCGGGAACTCAGTGCTTCAGGACTCCAGGCTCGTCCGTGTGCTCGA
TCAGTTCCAGGTGGTGCCTCTGCGGTTCTCCAGGGAGCTGGACACCTTTAACCCCAACACTCCTGAATGG
AGGGAAGATGTGGGACTGGTGGTCACCCGACTGCTCTCCAAGGAGACCAGCATCCCAGAGGAGCTGCTTG
TGACTGTGGTAAAGCCAGGGCTGCCCACCATAGCCGACTTGTATGTGCTTCTGCCTCTGCCAAGGCCCAC
AAGGAAGAGGAGCCTCACAAGTGACAAGAGACTGGCAGCCGTGCAGCAGGCGCTGAACTCTCATAGAATC
AGCTTCATCCTTCGAGGAGGGCTTCGTATCCTGGTGGAGCTGAGGGACACAGACACAGGTCCTCAGAGGC
CAGGTGGCAGTGGTGGCTACTGGGCCGTGGTGGTCCTCTTTGTCATTGGGCTCTTTGCAGTAGGAGCATT
CATCCTCTACAAGTTCAAAAGGAAACGTCCAGGCAGGACAGTGTACGCCCAGATGCACAATGAGAAGGAA
CAGGAGATGACAAGTCCCGTGAGTCACAGTGAGGATGCCCAGAGCACCATGCAGGGCAACCACTCAGGGG
TGGTCCTGAGCATCAACTCTCGTGAGATGCATAGCTACCTGGTGGGCTGA

Translation (1159 aa):
MAHRGPPSAPKRPGPTAPDRSFQALLPPCWPRSWPLLLLLLVLVAACGAMGRSPQPGRQGPGVQITRLLP
AGRTESGDRKDPQARESEPSVPGLGPGSASGPSTDGAPAPGKGRRARAVPVAGAASASRAQVSLISTSFV
LKGDATHNQAMVHWTGENSSVILILTKYYHADMGKVLESSLWRSSDFGTTYTKLTLQPGVTTVIDNFYIC
PANKRKIILVSSSLGDREQSLFLSTDEGATFQKYPVPFLVEMLLFHPKEEDKVLAYTKDSKLYVSSDLGK
KWTLLQERVTKDHVFWAVSGVDDDPNLVHVEAQDLSGGYRYYTCLIYNCSAQPHIAPFSGPIDRGSLTVQ
DEYIFLKATSTNRTKYYVSYRRSDFVLMKLPKYALPKDLQIISTDEQQVFVAVQEWNQVDTYNLYQSDLR
GVRYSLVLENVRSSRQAEENVVIDILEVRGVKGVFLANQKVDGKVTTVITYNKGRDWDYLRPPSTDMNGK
PTNCQPPDCYLHLHLRWADNPYVSGTVHTKDTAPGLIMGAGNLGSQLVEYKEEMYITSDCGHTWRQVFEE
EHHVLYLDHGGVIAAIKDTSIPLKILKFSVDEGHTWSTHNFTSTSVFVDGLLSEPGDETLVMTVFGHISF
RSDWELVKVDFRPSFPRQCGEDDYSSWDLTDLQGDHCIMGQQRSYRKRKSTSWCVKGRSFTSALTSRVCK
CRDSDFLCDYGFERSSSSESTANKCSANFWFNPLSPPEDCVLGQTYTSSLGYRKVVSNVCEGGVDLQQSP
VQLQCPLQAPRGLQVSIRGEAVAVRPREDVLFVVRQEQGDVLTTKYQVDLGDGFKAMYVNLTLTGEPIRH
HYESPGIYRVSVRAENMAGHDEAVLFVQVNSPLQALYLEVVPVIGVNQEVNLTAVLLPLNPNLTVFYWWI
GHSLQPLLSLDNSVTTKFTDAGDVRVTVQAACGNSVLQDSRLVRVLDQFQVVPLRFSRELDTFNPNTPEW
REDVGLVVTRLLSKETSIPEELLVTVVKPGLPTIADLYVLLPLPRPTRKRSLTSDKRLAAVQQALNSHRI
SFILRGGLRILVELRDTDTGPQRPGGSGGYWAVVVLFVIGLFAVGAFILYKFKRKRPGRTVYAQMHNEKE
QEMTSPVSHSEDAQSTMQGNHSGVVLSINSREMHSYLVG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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