NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS32782.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
32782.1 Public Homo sapiens 18 COLEC12 24 110 108 CCDS HistoryNCBI Gene:81035Re-query CCDS DB by CCDS ID:32782.1See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 32782.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000400256.5 ENSP00000383115.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000400256.5Link to Ensembl Protein Viewer:ENSP00000383115.3Re-query CCDS DB by Nucleotide ID:ENST00000400256Re-query CCDS DB by Protein ID:ENSP00000383115
Original member Current member NCBI NM_130386.3 NP_569057.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_130386.3Link to Protein Sequence:NP_569057.2Re-query CCDS DB by Nucleotide ID:NM_130386Re-query CCDS DB by Protein ID:NP_569057Link to BLAST:NP_569057.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_569057.2 742 Q5KU26 742 100% 0 0

Chromosomal Locations for CCDS 32782.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 320045 320064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 321662 321807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 331668 331777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 333007 333143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 334742 335230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 346295 347341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 348065 348163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 357400 357522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 480707 480757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 500508 500514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2229 nt):
ATGAAAGACGACTTCGCAGAGGAGGAGGAGGTGCAATCCTTCGGTTACAAGCGGTTTGGTATTCAGGAAG
GAACACAATGTACCAAATGTAAAAATAACTGGGCACTGAAGTTTTCTATCATATTATTATACATTTTGTG
TGCCTTGCTAACAATCACAGTAGCCATTTTGGGATATAAAGTTGTAGAGAAAATGGACAATGTCACAGGT
GGCATGGAAACATCTCGCCAAACCTATGATGACAAGCTCACAGCAGTGGAAAGTGACCTGAAAAAATTAG
GTGACCAAACTGGGAAGAAAGCTATCAGCACCAACTCAGAACTCTCCACCTTCAGATCAGACATTCTAGA
TCTCCGTCAGCAACTTCGTGAGATTACAGAAAAAACCAGCAAGAACAAGGATACGCTGGAGAAGTTACAG
GCGAGCGGGGATGCTCTGGTGGACAGGCAGAGTCAATTGAAAGAAACTTTGGAGAATAACTCTTTCCTCA
TCACCACTGTAAACAAAACCCTCCAGGCGTATAATGGCTATGTCACGAATCTGCAGCAAGATACCAGCGT
GCTCCAGGGCAATCTGCAGAACCAAATGTATTCTCATAATGTGGTCATCATGAACCTCAACAACCTGAAC
CTGACCCAGGTGCAGCAGAGGAACCTCATCACGAATCTGCAGCGGTCTGTGGATGACACAAGCCAGGCTA
TCCAGCGAATCAAGAACGACTTTCAAAATCTGCAGCAGGTTTTTCTTCAAGCCAAGAAGGACACGGATTG
GCTGAAGGAGAAAGTGCAGAGCTTGCAGACGCTGGCTGCCAACAACTCTGCGTTGGCCAAAGCCAACAAC
GACACCCTGGAGGATATGAACAGCCAGCTCAACTCATTCACAGGTCAGATGGAGAACATCACCACTATCT
CTCAAGCCAACGAGCAGAACCTGAAAGACCTGCAGGACTTACACAAAGATGCAGAGAATAGAACAGCCAT
CAAGTTCAACCAACTGGAGGAACGCTTCCAGCTCTTTGAGACGGATATTGTGAACATCATTAGCAATATC
AGTTACACAGCCCACCACCTGCGGACGCTGACCAGCAATCTAAATGAAGTCAGGACCACTTGCACAGATA
CCCTTACCAAACACACAGATGATCTGACCTCCTTGAATAATACCCTGGCCAACATCCGTTTGGATTCTGT
TTCTCTCAGGATGCAACAAGATTTGATGAGGTCGAGGTTAGACACTGAAGTAGCCAACTTATCAGTGATT
ATGGAAGAAATGAAGCTAGTAGACTCCAAGCATGGTCAGCTCATCAAGAATTTTACAATACTACAAGGTC
CACCGGGCCCCAGGGGTCCAAGAGGTGACAGAGGATCCCAGGGACCCCCTGGCCCAACTGGCAACAAGGG
ACAGAAAGGAGAGAAGGGGGAGCCTGGACCACCTGGCCCTGCGGGTGAGAGAGGCCCAATTGGACCAGCT
GGTCCCCCCGGAGAGCGTGGCGGCAAAGGATCTAAAGGCTCCCAGGGCCCCAAAGGCTCCCGTGGTTCCC
CTGGGAAGCCCGGCCCTCAGGGCTCCAGTGGGGACCCAGGCCCCCCGGGCCCACCAGGCAAAGAGGGACT
CCCCGGCCCTCAGGGCCCTCCTGGCTTCCAGGGACTTCAGGGCACCGTTGGGGAGCCTGGGGTGCCTGGA
CCTCGGGGACTGCCAGGCTTGCCTGGGGTACCAGGCATGCCAGGCCCCAAGGGCCCCCCCGGCCCTCCTG
GCCCATCAGGAGCGGTGGTGCCCCTGGCCCTGCAGAATGAGCCAACCCCAGCACCGGAGGACAATGGCTG
CCCGCCTCACTGGAAGAACTTCACAGACAAATGCTACTATTTTTCAGTTGAGAAAGAAATTTTTGAGGAT
GCAAAGCTTTTCTGTGAAGACAAGTCTTCACATCTTGTTTTCATAAACACTAGAGAGGAACAGCAATGGA
TAAAAAAACAGATGGTAGGGAGAGAGAGCCACTGGATCGGCCTCACAGACTCAGAGCGTGAAAATGAATG
GAAGTGGCTGGATGGGACATCTCCAGACTACAAAAATTGGAAAGCTGGACAGCCGGATAACTGGGGTCAT
GGCCATGGGCCAGGAGAAGACTGTGCTGGGTTGATTTATGCTGGGCAGTGGAACGATTTCCAATGTGAAG
ACGTCAATAACTTCATTTGCGAAAAAGACAGGGAGACAGTACTGTCATCTGCATTATAA

Translation (742 aa):
MKDDFAEEEEVQSFGYKRFGIQEGTQCTKCKNNWALKFSIILLYILCALLTITVAILGYKVVEKMDNVTG
GMETSRQTYDDKLTAVESDLKKLGDQTGKKAISTNSELSTFRSDILDLRQQLREITEKTSKNKDTLEKLQ
ASGDALVDRQSQLKETLENNSFLITTVNKTLQAYNGYVTNLQQDTSVLQGNLQNQMYSHNVVIMNLNNLN
LTQVQQRNLITNLQRSVDDTSQAIQRIKNDFQNLQQVFLQAKKDTDWLKEKVQSLQTLAANNSALAKANN
DTLEDMNSQLNSFTGQMENITTISQANEQNLKDLQDLHKDAENRTAIKFNQLEERFQLFETDIVNIISNI
SYTAHHLRTLTSNLNEVRTTCTDTLTKHTDDLTSLNNTLANIRLDSVSLRMQQDLMRSRLDTEVANLSVI
MEEMKLVDSKHGQLIKNFTILQGPPGPRGPRGDRGSQGPPGPTGNKGQKGEKGEPGPPGPAGERGPIGPA
GPPGERGGKGSKGSQGPKGSRGSPGKPGPQGSSGDPGPPGPPGKEGLPGPQGPPGFQGLQGTVGEPGVPG
PRGLPGLPGVPGMPGPKGPPGPPGPSGAVVPLALQNEPTPAPEDNGCPPHWKNFTDKCYYFSVEKEIFED
AKLFCEDKSSHLVFINTREEQQWIKKQMVGRESHWIGLTDSERENEWKWLDGTSPDYKNWKAGQPDNWGH
GHGPGEDCAGLIYAGQWNDFQCEDVNNFICEKDRETVLSSAL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH