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Report for CCDS13475.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13475.1 Public Homo sapiens 20 TUBB1 24 110 108 CCDS HistoryNCBI Gene:81027Re-query CCDS DB by CCDS ID:13475.1See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13475.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000217133.2 ENSP00000217133.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000217133.2Link to Ensembl Protein Viewer:ENSP00000217133.1Re-query CCDS DB by Nucleotide ID:ENST00000217133Re-query CCDS DB by Protein ID:ENSP00000217133
Original member Current member NCBI NM_030773.4 NP_110400.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_030773.4Link to Protein Sequence:NP_110400.1Re-query CCDS DB by Nucleotide ID:NM_030773Re-query CCDS DB by Protein ID:NP_110400Link to BLAST:NP_110400.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_110400.1 451 Q9H4B7 451 100% 0 0

Chromosomal Locations for CCDS 13475.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 59019523 59019579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 59022845 59022953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 59023490 59023600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 59023705 59024783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1356 nt):
ATGCGTGAAATTGTCCATATTCAGATTGGCCAGTGTGGCAACCAGATCGGAGCCAAGTTCTGGGAGATGA
TTGGTGAGGAACACGGGATCGACTTGGCTGGGAGCGACCGCGGGGCCTCGGCCTTGCAGCTGGAGAGAAT
CAGCGTGTACTACAACGAAGCCTACGGTAGGAAATATGTGCCCCGAGCAGTCTTGGTGGACCTAGAACCT
GGGACGATGGACAGCATTCGATCTAGCAAATTAGGAGCTCTCTTTCAACCCGACAGTTTTGTCCATGGTA
ACTCTGGGGCTGGCAACAACTGGGCCAAAGGCCACTACACGGAGGGAGCCGAGCTGATCGAGAATGTCCT
AGAGGTGGTGAGGCACGAGAGTGAGAGCTGTGACTGCCTGCAGGGCTTCCAGATCGTCCACTCCCTGGGC
GGGGGCACAGGCTCCGGGATGGGCACTCTGCTCATGAACAAGATTAGAGAGGAGTACCCGGACCGGATCA
TGAATTCCTTCAGCGTCATGCCTTCTCCCAAGGTGTCGGACACTGTGGTGGAGCCCTACAACGCGGTTCT
GTCTATCCACCAGCTGATTGAGAATGCAGATGCCTGTTTCTGCATTGACAATGAGGCCCTCTATGACATC
TGCTTCCGTACCCTGAAGCTGACGACACCCACCTATGGGGATCTCAACCACCTAGTGTCCTTGACCATGA
GCGGCATAACCACCTCCCTCCGGTTCCCGGGTCAGCTCAACGCAGACCTGCGCAAGCTGGCGGTGAACAT
GGTCCCCTTCCCCCGCCTGCACTTCTTTATGCCCGGCTTTGCCCCACTCACGGCCCAGGGCAGCCAGCAG
TACCGAGCCCTCTCCGTGGCCGAGCTCACCCAGCAGATGTTCGATGCCCGCAATACCATGGCTGCCTGTG
ACCTCCGCCGTGGCCGCTACCTCACAGTGGCCTGCATTTTCCGGGGCAAGATGTCCACCAAGGAAGTGGA
CCAGCAACTGCTCTCCGTGCAGACCAGGAACAGCAGCTGCTTTGTGGAGTGGATTCCCAACAACGTCAAG
GTGGCTGTCTGCGACATCCCGCCCCGGGGGCTGAGCATGGCCGCCACCTTCATTGGCAACAACACGGCCA
TCCAAGAGATCTTTAATAGGGTCTCTGAGCATTTCTCAGCCATGTTCAAAAGGAAAGCTTTTGTGCACTG
GTACACCAGCGAAGGGATGGACATAAACGAATTTGGGGAAGCTGAAAATAACATCCATGATTTGGTATCC
GAGTACCAACAATTTCAAGATGCCAAAGCAGTTCTAGAGGAAGATGAAGAGGTCACGGAGGAGGCAGAAA
TGGAGCCAGAAGATAAGGGACATTAA

Translation (451 aa):
MREIVHIQIGQCGNQIGAKFWEMIGEEHGIDLAGSDRGASALQLERISVYYNEAYGRKYVPRAVLVDLEP
GTMDSIRSSKLGALFQPDSFVHGNSGAGNNWAKGHYTEGAELIENVLEVVRHESESCDCLQGFQIVHSLG
GGTGSGMGTLLMNKIREEYPDRIMNSFSVMPSPKVSDTVVEPYNAVLSIHQLIENADACFCIDNEALYDI
CFRTLKLTTPTYGDLNHLVSLTMSGITTSLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTAQGSQQ
YRALSVAELTQQMFDARNTMAACDLRRGRYLTVACIFRGKMSTKEVDQQLLSVQTRNSSCFVEWIPNNVK
VAVCDIPPRGLSMAATFIGNNTAIQEIFNRVSEHFSAMFKRKAFVHWYTSEGMDINEFGEAENNIHDLVS
EYQQFQDAKAVLEEDEEVTEEAEMEPEDKGH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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