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Report for CCDS23664.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23664.1 Public Mus musculus 9 Cxcr6 23 108 98 CCDS HistoryNCBI Gene:80901Re-query CCDS DB by CCDS ID:23664.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23664.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000049810.8 ENSMUSP00000060776.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000049810.8Link to Ensembl Protein Viewer:ENSMUSP00000060776.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000049810Re-query CCDS DB by Protein ID:ENSMUSP00000060776
Original member Current member NCBI NM_030712.4 NP_109637.3 Accepted alive Link to Nucleotide Sequence:NM_030712.4Link to Protein Sequence:NP_109637.3Re-query CCDS DB by Nucleotide ID:NM_030712Re-query CCDS DB by Protein ID:NP_109637Link to BLAST:NP_109637.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_109637.3 351 Q9EQ16 351 100% 0 0

Chromosomal Locations for CCDS 23664.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 123809936 123810991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1056 nt):
ATGGATGATGGGCATCAAGAGTCAGCTCTGTACGATGGGCACTACGAGGGAGATTTCTGGCTCTTCAACA
ATTCCAGTGATAACAGCCAGGAGAACAAACGCTTCCTAAAGTTCAAGGAGGTCTTTTTGCCCTGTGTGTA
CCTGGTAGTGTTTGTCTTTGGACTGCTAGGAAACTCCCTGGTTCTGATTATATACATTTTCTACCAGAAG
CTGAGGACTCTGACAGATGTGTTTCTGCTGAACTTGCCCCTGGCTGACCTGGTGTTTGTCTGTACTCTGC
CCTTTTGGGCCTATGCAGGCACCTATGAGTGGGTCTTTGGCACAGTCATGTGCAAAACTCTTCGAGGCAT
GTATACAATGAACTTCTACGTGTCCATGCTCACTCTCACCTGCATCACAGTGGATCGTTTCATTGTAGTG
GTCCAGGCTACCAAGGCCTTCAACCGGCAGGCTAAGTGGAAGATCTGGGGCCAAGTCATTTGCTTGCTCA
TTTGGGTGGTCTCCCTGTTGGTTTCTTTGCCACAGATCATCTATGGCCATGTTCAAGATATTGACAAGCT
TATCTGTCAGTACCACAGTGAGGAGATATCCACTATGGTTCTTGTTATACAGATGACTCTGGGGTTCTTC
CTGCCATTGCTCACTATGATTCTGTGCTACTCAGGCATTATCAAGACCTTGCTTCATGCTCGAAACTTCC
AGAAGCACAAATCTCTAAAGATCATCTTCCTTGTAGTGGCTGTGTTCCTGCTGACCCAGACACCCTTCAA
CCTTGCCATGTTAATCCAAAGTACAAGCTGGGAGTACTATACCATAACCAGCTTTAAGTATGCCATCGTA
GTGACAGAGGCTATAGCATACTTTCGGGCTTGCCTTAACCCTGTACTTTATGCCTTTGTTGGCTTAAAGT
TCCGGAAGAACGTCTGGAAACTTATGAAGGATATCGGCTGCCTCTCTCACCTGGGAGTCTCAAGTCAATG
GAAGTCTTCTGAGGACAGTTCCAAGACTTGTTCTGCCTCCCACAATGTAGAGACCACCAGTATGTTCCAA
TTGTAG

Translation (351 aa):
MDDGHQESALYDGHYEGDFWLFNNSSDNSQENKRFLKFKEVFLPCVYLVVFVFGLLGNSLVLIIYIFYQK
LRTLTDVFLLNLPLADLVFVCTLPFWAYAGTYEWVFGTVMCKTLRGMYTMNFYVSMLTLTCITVDRFIVV
VQATKAFNRQAKWKIWGQVICLLIWVVSLLVSLPQIIYGHVQDIDKLICQYHSEEISTMVLVIQMTLGFF
LPLLTMILCYSGIIKTLLHARNFQKHKSLKIIFLVVAVFLLTQTPFNLAMLIQSTSWEYYTITSFKYAIV
VTEAIAYFRACLNPVLYAFVGLKFRKNVWKLMKDIGCLSHLGVSSQWKSSEDSSKTCSASHNVETTSMFQ
L


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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