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Report for CCDS7923.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7923.1 Public Homo sapiens 11 ZNF408 24 110 108 CCDS HistoryNCBI Gene:79797Re-query CCDS DB by CCDS ID:7923.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7923.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000311764.3 ENSP00000309606.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000311764.3Link to Ensembl Protein Viewer:ENSP00000309606.2Re-query CCDS DB by Nucleotide ID:ENST00000311764Re-query CCDS DB by Protein ID:ENSP00000309606
Original member Current member NCBI NM_024741.3 NP_079017.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024741.3Link to Protein Sequence:NP_079017.1Re-query CCDS DB by Nucleotide ID:NM_024741Re-query CCDS DB by Protein ID:NP_079017Link to BLAST:NP_079017.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079017.1 720 Q9H9D4 720 100% 0 0

Chromosomal Locations for CCDS 7923.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 46701048 46701099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46701399 46701676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46702704 46702765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46702984 46703243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46704353 46705863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2163 nt):
ATGGAGGAGGCGGAGGAGCTGCTCTTGGAGGGGAAGAAGGCGCTGCAACTCGCCCGCGAGCCGCGCCTGG
GCCTGGACTTAGGATGGAACCCTTCCGGAGAAGGCTGTACGCAGGGCCTCAAAGACGTCCCACCCGAGCC
GACCCGAGACATCCTCGCTTTAAAGAGCCTTCCCCGGGGCTTGGCCCTTGGCCCCTCACTCGCCAAGGAA
CAGCGCTTGGGGGTCTGGTGTGTCGGGGACCCCCTGCAGCCCGGCCTGCTGTGGGGGCCGCTGGAAGAGG
AGTCTGCCTCCAAGGAGAAGGGCGAGGGAGTAAAGCCACGGCAGGAGGAGAACCTGTCATTAGGCCCATG
GGGAGACGTGTGTGCCTGTGAGCAGAGTTCTGGCTGGACTAGCTTGGTACAACGGGGCAGGCTGGAGAGT
GAGGGAAATGTGGCCCCAGTGCGGATCAGCGAGAGGCTTCATCTGCAAGTGTACCAGCTGGTGCTGCCAG
GCTCTGAACTGCTGCTGTGGCCCCAGCCTTCCTCTGAGGGCCCAAGTCTCACCCAGCCTGGGCTGGACAA
AGAGGCAGCTGTAGCAGTGGTGACAGAAGTGGAGTCTGCTGTACAGCAGGAAGTGGCCTCCCCTGGGGAG
GATGCAGCAGAACCTTGCATAGATCCTGGTTCCCAGTCACCCTCTGGCATCCAGGCAGAGAATATGGTGA
GCCCTGGACTTAAGTTCCCAACCCAGGACCGAATTTCCAAGGATAGCCAGCCACTTGGCCCATTGCTTCA
GGATGGCGACGTGGATGAGGAATGCCCGGCCCAGGCACAGATGCCACCTGAACTTCAGAGCAATTCGGCT
ACCCAGCAGGACCCAGATGGCAGTGGAGCCAGTTTCTCATCTTCTGCCAGGGGCACCCAGCCGCATGGCT
ACCTGGCCAAGAAGTTACACAGCCCCAGTGATCAGTGCCCACCCAGAGCAAAGACCCCAGAGCCTGGAGC
CCAGCAGTCTGGCTTCCCTACACTCTCGCGGAGCCCTCCTGGCCCAGCAGGAAGCTCCCCAAAGCAGGGG
CGACGGTACCGGTGTGGAGAGTGTGGCAAGGCATTCCTACAGCTGTGCCACCTAAAGAAGCACGCATTTG
TGCACACGGGCCACAAGCCCTTTCTTTGCACTGAGTGTGGCAAGAGCTATAGCTCAGAGGAGAGCTTCAA
AGCCCATATGCTGGGCCACCGTGGGGTGCGGCCCTTCCCCTGTCCACAATGCGACAAGGCCTATGGCACC
CAGCGAGACCTCAAAGAGCACCAGGTGGTACATTCAGGTGCCCGGCCCTTTGCTTGTGACCAGTGTGGCA
AGGCCTTTGCCCGCCGGCCCTCCCTGCGGCTGCATCGCAAGACCCACCAGGTGCCAGCTGCCCCTGCCCC
TTGCCCATGCCCTGTGTGTGGGCGGCCCCTGGCCAACCAGGGCTCCCTGCGGAACCATATGAGGCTCCAT
ACAGGAGAAAAGCCTTTCCTGTGCCCGCACTGTGGCCGGGCGTTTCGTCAGCGGGGCAACCTGCGTGGGC
ATTTGCGGCTCCACACCGGGGAGCGTCCTTACCGCTGCCCACACTGTGCCGATGCCTTCCCCCAGCTGCC
TGAACTGCGGCGCCATCTCATCTCACACACCGGGGAGGCCCACTTGTGCCCGGTGTGTGGCAAGGCCCTC
CGAGACCCACACACGCTCCGAGCTCACGAGCGCCTGCACTCCGGAGAGAGGCCCTTTCCCTGTCCCCAGT
GTGGCCGTGCTTACACGCTGGCCACCAAGCTGCGGCGCCACCTCAAATCTCACTTGGAGGACAAGCCCTA
CCGCTGCCCCACCTGTGGCATGGGCTACACCCTCCCGCAGAGCCTCAGGCGGCATCAGCTCAGTCACCGG
CCTGAGGCACCCTGCAGCCCACCCTCTGTGCCTTCTGCTGCTTCTGAGCCCACTGTGGTGCTCCTGCAGG
CTGAGCCACAACTGCTGGACACACACAGAGAGGAGGAAGTCTCCCCCGCCAGGGATGTTGTTGAGGTCAC
CATTTCAGAAAGCCAGGAGAAGTGCTTTGTGGTGCCAGAGGAGCCAGATGCCGCCCCCAGCCTGGTGCTA
ATCCATAAGGACATGGGCCTCGGCGCCTGGGCAGAGGTGGTGGAGGTGGAGATGGGCACCTGA

Translation (720 aa):
MEEAEELLLEGKKALQLAREPRLGLDLGWNPSGEGCTQGLKDVPPEPTRDILALKSLPRGLALGPSLAKE
QRLGVWCVGDPLQPGLLWGPLEEESASKEKGEGVKPRQEENLSLGPWGDVCACEQSSGWTSLVQRGRLES
EGNVAPVRISERLHLQVYQLVLPGSELLLWPQPSSEGPSLTQPGLDKEAAVAVVTEVESAVQQEVASPGE
DAAEPCIDPGSQSPSGIQAENMVSPGLKFPTQDRISKDSQPLGPLLQDGDVDEECPAQAQMPPELQSNSA
TQQDPDGSGASFSSSARGTQPHGYLAKKLHSPSDQCPPRAKTPEPGAQQSGFPTLSRSPPGPAGSSPKQG
RRYRCGECGKAFLQLCHLKKHAFVHTGHKPFLCTECGKSYSSEESFKAHMLGHRGVRPFPCPQCDKAYGT
QRDLKEHQVVHSGARPFACDQCGKAFARRPSLRLHRKTHQVPAAPAPCPCPVCGRPLANQGSLRNHMRLH
TGEKPFLCPHCGRAFRQRGNLRGHLRLHTGERPYRCPHCADAFPQLPELRRHLISHTGEAHLCPVCGKAL
RDPHTLRAHERLHSGERPFPCPQCGRAYTLATKLRRHLKSHLEDKPYRCPTCGMGYTLPQSLRRHQLSHR
PEAPCSPPSVPSAASEPTVVLLQAEPQLLDTHREEEVSPARDVVEVTISESQEKCFVVPEEPDAAPSLVL
IHKDMGLGAWAEVVEVEMGT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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