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Report for CCDS2734.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2734.1 Public Homo sapiens 3 FYCO1 24 110 108 CCDS HistoryNCBI Gene:79443Re-query CCDS DB by CCDS ID:2734.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2734.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000296137.7 ENSP00000296137.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000296137.7Link to Ensembl Protein Viewer:ENSP00000296137.2Re-query CCDS DB by Nucleotide ID:ENST00000296137Re-query CCDS DB by Protein ID:ENSP00000296137
Original member Current member NCBI NM_001386421.1 NP_001373350.1 Accepted alive Link to Nucleotide Sequence:NM_001386421.1Link to Protein Sequence:NP_001373350.1Re-query CCDS DB by Nucleotide ID:NM_001386421Re-query CCDS DB by Protein ID:NP_001373350Link to BLAST:NP_001373350.1
Original member Current member NCBI NM_001386422.1 NP_001373351.1 Accepted alive Link to Nucleotide Sequence:NM_001386422.1Link to Protein Sequence:NP_001373351.1Re-query CCDS DB by Nucleotide ID:NM_001386422Re-query CCDS DB by Protein ID:NP_001373351Link to BLAST:NP_001373351.1
Original member Current member NCBI NM_024513.4 NP_078789.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024513.4Link to Protein Sequence:NP_078789.2Re-query CCDS DB by Nucleotide ID:NM_024513Re-query CCDS DB by Protein ID:NP_078789Link to BLAST:NP_078789.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001373350.1 1478 Q9BQS8-1 1478 100% 0 0
NP_001373351.1 1478 Q9BQS8-1 1478 100% 0 0
NP_078789.2 1478 Q9BQS8-1 1478 100% 0 0

Chromosomal Locations for CCDS 2734.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 45921765 45921840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 45923656 45923765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 45931071 45931281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 45936448 45936543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 45955249 45955393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 45958408 45958619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 45959393 45959542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 45962225 45962392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 45964336 45964454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 45965033 45965125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 45966277 45968703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 45969675 45969765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 45973088 45973231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 45975239 45975345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 45979705 45979830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 45981570 45981676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 45984856 45984910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4437 nt):
ATGGCCTCCACCAATGCAGAGAGCCAGCTCCAGAGAATCATCCGAGACTTGCAAGATGCTGTGACAGAAC
TA
AGCAAAGAATTTCAGGAAGCAGGGGAACCCATCACGGATGACAGCACCAGCTTGCATAAATTTTCTTA
T
AAACTTGAGTATCTCCTGCAATTTGATCAGAAAGAGAAGGCCACCCTCCTGGGCAACAAGAAGGACTAC
TGG
GATTACTTCTGTGCCTGCCTGGCCAAGGTGAAAGGAGCCAATGATGGGATCCGCTTTGTCAAGTCTA
TC
TCAGAGCTCCGAACATCCTTGGGGAAAGGAAGAGCATTTATTCGCTACTCCTTGGTGCACCAGAGGTT
G
GCAGACACCTTACAGCAGTGCTTCATGAACACCAAAGTGACCAGTGACTGGTACTATGCAAGAAGCCCC
TTT
CTGCAGCCAAAGCTGAGCTCGGACATTGTGGGCCAACTCTATGAGCTGACTGAGGTTCAGTTTGACC
TG
GCGTCGAGGGGCTTTGACTTGGATGCTGCCTGGCCAACATTTGCCAGGAGGACGCTGACCACTGGCTC
T
TCTGCTTACCTGTGGAAACCCCCTAGCCGCAGCTCCAGCATGAGCAGCTTGGTGAGCAGCTACCTGCAG
ACT
CAAGAGATGGTGTCCAACTTTGACCTGAACAGCCCCCTAAACAACGAGGCATTGGAGGGCTTTGATG
AG
ATGCGACTAGAGCTGGACCAGTTGGAGGTGCGGGAGAAGCAGCTACGGGAGCGCATGCAGCAGCTGGA
C
AGAGAGAACCAGGAGCTGAGGGCAGCTGTCAGCCAGCAAGGGGAGCAACTGCAGACAGAGAGGGAGAGG
GGG
CGCACTGCAGCGGAGGACAACGTTCGCCTCACTTGCTTGGTAGCTGAGCTCCAGAAGCAGTGGGAGG
TC
ACCCAGGCCACCCAGAACACTGTGAAGGAGCTGCAGACATGCCTGCAGGGCCTGGAGCTAGGAGCAGC
A
GAGAAGGAGGAGGACTACCACACAGCCCTGCGGCGGCTGGAGTCCATGCTGCAGCCCTTGGCACAGGAG
CTT
GAGGCCACACGGGACTCACTGGACAAGAAAAACCAGCATTTAGCCAGCTTCCCAGGCTGGCTAGCCA
TG
GCTCAGCAGAAGGCAGATACGGCATCAGACACAAAGGGCCGGCAAGAACCTATTCCCAGTGATGCGGC
C
CAGGAGATGCAGGAGCTAGGGGAGAAGCTTCAAGCCCTAGAAAGGGAGAGAACCAAGGTCGAGGAGGTC
AAC
AGACAGCAGAGTGCCCAACTGGAACAGCTGGTCAAGGAGCTTCAGCTGAAAGAGGATGCCCGGGCCA
GC
CTGGAGCGCCTGGTGAAGGAGATGGCCCCACTCCAGGAGGAGTTGTCTGGGAAGGGACAGGAGGCAGA
C
CAGCTCTGGCGACGGCTGCAGGAGTTGCTGGCCCACACGAGCTCCTGGGAGGAGGAGCTAGCAGAGTTG
AGG
CGGGAGAAAAAACAGCAACAGGAGGAGAAGGAGCTGCTGGAGCAGGAGGTCAGGTCTCTGACCCGGC
AG
CTGCAGTTCCTGGAGACCCAGCTGGCACAGGTGAGCCAACATGTGAGTGACCTGGAGGAGCAGAAGAA
G
CAGCTCATTCAGGACAAAGACCACCTCAGCCAGCAGGTGGGTATGCTCGAGCGGCTTGCTGGGCCGCCT
GGC
CCAGAACTGCCAGTGGCAGGTGAGAAGAATGAGGCCCTGGTCCCTGTGAACTCCAGTCTGCAAGAGG
CC
TGGGGGAAGCCAGAGGAGGAGCAGAGGGGCCTGCAGGAGGCACAGTTAGACGATACCAAGGTGCAAGA
G
GGCAGCCAGGAGGAAGAGCTCCGGCAGGCCAACAGGGAGCTGGAGAAGGAGCTACAGAATGTGGTCGGG
CGT
AACCAGCTCCTGGAGGGCAAGCTGCAAGCCCTGCAGGCCGATTACCAGGCTTTGCAGCAGCGGGAAT
CA
GCCATCCAGGGCTCCTTGGCCTCCCTGGAGGCCGAGCAGGCCAGCATCCGGCACTTGGGTGACCAGAT
G
GAGGCGAGCTTGCTGGCTGTAAGGAAGGCCAAGGAGGCCATGAAAGCCCAGATGGCAGAGAAGGAGGCC
ATT
CTACAGAGCAAGGAGGGCGAGTGTCAGCAGCTGCGGGAGGAGGTGGAGCAGTGCCAGCAACTGGCAG
AA
GCCCGGCACAGAGAGCTTAGGGCTCTCGAGAGCCAGTGCCAGCAGCAGACCCAGCTGATTGAGGTCCT
C
ACAGCAGAGAAAGGCCAACAGGGAGTTGGCCCACCCACTGACAATGAAGCCCGTGAGCTGGCTGCCCAG
CTA
GCCCTGTCTCAGGCGCAGCTGGAAGTCCATCAGGGGGAGGTCCAACGGCTGCAGGCTCAGGTGGTGG
AC
CTCCAGGCCAAGATGCGGGCAGCCCTGGATGACCAGGACAAGGTGCAGAGCCAGCTAAGCATGGCTGA
G
GCCGTCCTGAGGGAGCACAAAACCCTTGTGCAGCAGCTGAAGGAGCAGAATGAAGCCCTTAACAGAGCC
CAT
GTCCAGGAGCTGCTGCAATGCTCGGAGCGTGAAGGGGCACTGCAGGAGGAGAGGGCCGATGAGGCCC
AG
CAGAGGGAGGAGGAGCTGCGGGCCCTGCAGGAGGAGCTGTCCCAGGCCAAATGCAGCTCCGAGGAAGC
A
CAGCTGGAGCACGCTGAGCTGCAAGAGCAGCTGCACCGGGCCAACACAGACACAGCTGAGCTGGGCATC
CAG
GTTTGCGCACTGACCGTGGAAAAGGAGCGAGTGGAGGAGGCACTGGCCTGTGCTGTCCAGGAGCTCC
AG
GACGCCAAAGAGGCAGCCTCAAGGGAGCGAGAGGGCCTGGAGCGCCAAGTAGCTGGGCTGCAGCAAGA
G
AAGGAGAGCTTGCAGGAGAAGCTGAAGGCGGCCAAGGCAGCAGCCGGCTCACTGCCTGGCCTGCAGGCC
CAG
CTCGCCCAGGCAGAGCAGCGGGCCCAGAGCCTCCAAGAGGCTGCACACCAGGAGCTCAACACCCTCA
AG
TTCCAGCTGAGTGCTGAAATCATGGACTACCAGAGCAGACTTAAGAATGCTGGTGAAGAGTGCAAGAG
C
CTCAGGGGCCAGCTTGAGGAGCAAGGCCGGCAGCTGCAGGCTGCTGAGGAAGCTGTGGAGAAGCTGAAG
GCC
ACCCAAGCAGACATGGGAGAGAAGCTGAGCTGCACTAGCAACCATCTTGCAGAGTGCCAGGCGGCCA
TG
CTGAGGAAGGACAAGGAGGGGGCTGCCCTGCGTGAAGACCTAGAAAGGACCCAGAAGGAACTCGAAAA
A
GCCACAACAAAAATCCAAGAGTATTACAACAAACTCTGCCAGGAGGTGACAAATCGTGAGAGGAATGAC
CAG
AAGATGCTTGCTGACCTGGATGACCTCAACAGAACCAAGAAGTATCTCGAGGAGCGGCTGATAGAGC
TG
CTCAGGGACAAGGATGCTCTCTGGCAGAAGTCAGATGCCCTGGAATTCCAGCAGAAGCTCAGTGCTGA
G
GAGAGATGGCTCGGAGACACAGAGGCAAACCACTGCCTCGACTGTAAGCGGGAGTTCAGCTGGATGGTG
CGG
CGGCACCACTGCAGGATATGTGGCCGCATCTTCTGTTACTACTGCTGCAACAACTACGTCCTGAGCA
AG
CACGGTGGCAAAAAGGAGCGCTGCTGCCGAGCCTGTTTCCAGAAGCTCAGTGAAGGCCCTGGCTCCCC
T
GATAGCAGTGGCTCAGGCACTAGCCAGGGAGAGCCCAGCCCTGCACTGTCACCAGCCTCACCTGGGCCC
CAG
GCCACAGGAGGCCAAGGAGCAAATACAGACTACAGGCCACCGGACGACGCTGTGTTTGATATCATCA
CA
GATGAGGAATTGTGCCAGATACAGGAGTCCGGCTCCTCTTTGCCTGAAACACCCACTGAAACTGATTC
T
CTCGACCCAAATGCGGCTGAACAGGATACTACATCAACCTCGCTAACGCCTGAGGACACTGAAGACATG
CCC
GTGGGGCAGGATTCGGAAATCTGCCTGCTGAAGTCTGGAGAACTGATGATCAAAGTACCCCTCACAG
TG
GATGAGATCGCCAGCTTCGGGGAGGGTAGCAGGGAGCTGTTTGTGAGGTCCAGCACCTACAGCCTGAT
C
CCCATCACTGTGGCCGAGGCAGGCCTCACCATCAGCTGGGTCTTCTCCTCTGACCCCAAGAGCATCTCC
TTC
AGTGTGGTCTTCCAGGAGGCCGAGGACACACCGCTGGATCAGTGTAAGGTCCTCATTCCCACGACCC
GA
TGCAACTCCCACAAGGAGAACATCCAGGGCCAGCTCAAGGTTCGCACACCCGGCATCTACATGCTCAT
C
TTCGACAATACCTTCTCAAGGTTTGTCTCTAAAAAGGTATTTTATCACTTGACGGTTGATCGGCCTGTG
ATC
TACGATGGAAGTGATTTCCTGTAG


Translation (1478 aa):
MASTNAESQLQRIIRDLQDAVTELSKEFQEAGEPITDDSTSLHKFSYKLEYLLQFDQKEKATLLGNKKDY
W
DYFCACLAKVKGANDGIRFVKSISE
LRTSLGKGRAFIRYSLVHQRLADTLQQCFMNTKVTSDWYYARSP
F
LQPKLSSDIVGQLYELTEVQFDLASRGFDLDAAWPTFA
RRTLTTGSSAYLWKPPSRSSSMSSLVSSYLQ
T
QEMVSNFDLNSPLNNEALEGFDEMRLELDQLEVREKQLRERMQQLDRENQELRAAVSQQGEQLQTERER
G
RTAAEDNVRLTCLVAELQKQWEVTQATQNTVKELQTCLQGLELGAAEKEEDYHTALRRLESMLQPLAQE
L
EATRDSLDKKNQHLASFPGWLAMAQQKADTASDTKGRQEPIPSDAAQEMQELGEKLQALERERTKVEEV
N
RQQSAQLEQLVKELQLKEDARASLERLVKEMAPLQEELSGKGQEADQLWRRLQELLAHTSSWEEELAEL
R
REKKQQQEEKELLEQEVRSLTRQLQFLETQLAQVSQHVSDLEEQKKQLIQDKDHLSQQVGMLERLAGPP
G
PELPVAGEKNEALVPVNSSLQEAWGKPEEEQRGLQEAQLDDTKVQEGSQEEELRQANRELEKELQNVVG
R
NQLLEGKLQALQADYQALQQRESAIQGSLASLEAEQASIRHLGDQMEASLLAVRKAKEAMKAQMAEKEA
I
LQSKEGECQQLREEVEQCQQLAEARHRELRALESQCQQQTQLIEVLTAEKGQQGVGPPTDNEARELAAQ
L
ALSQAQLEVHQGEVQRLQAQVVDLQAKMRAALDDQDKVQSQLSMAEAVLREHKTLVQQLKEQNEALNRA
H
VQELLQCSEREGALQEERADEAQQREEELRALQEELSQAKCSSEEAQLEHAELQEQLHRANTDTAELGI
Q
VCALTVEKERVEEALACAVQELQDAKEAASREREGLERQVAGLQQEKESLQEKLKAAKAAAGSLPGLQA
Q
LAQAEQRAQSLQEAAHQELNTLKFQLSAEIMDYQSRLK
NAGEECKSLRGQLEEQGRQLQAAEEAVEKLK
A
TQADMGEKLSCTSNHLAECQAAMLRKDKEGAALREDLE
RTQKELEKATTKIQEYYNKLCQEVTNRERND
Q
KMLADLDDLNRTKKYLEERLIELL
RDKDALWQKSDALEFQQKLSAEERWLGDTEANHCLDCKREFSWMV
R
RHHC
RICGRIFCYYCCNNYVLSKHGGKKERCCRACFQKLSEGPGSPDSSGSGTSQGEPSPALSPASPGP
Q
ATGGQ
GANTDYRPPDDAVFDIITDEELCQIQESGSSLPETPTETDSLDPNAAEQDTTSTSLTPEDTEDM
P
VGQDSEICLLKSGEL
MIKVPLTVDEIASFGEGSRELFVRSSTYSLIPITVAEAGLTISWVFSSDPKSIS
F
SVVFQEAEDTPLDQCK
VLIPTTRCNSHKENIQGQLKVRTPGIYMLIFDNTFSRFVSKKVFYHLTVDRPV
I
YDGSDFL




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser