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Report for CCDS22752.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22752.1 Public Mus musculus 8 Spata2l 23 108 98 CCDS HistoryNCBI Gene:78779Re-query CCDS DB by CCDS ID:22752.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22752.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000098327.1 ENSMUSP00000095932.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000098327.1Link to Ensembl Protein Viewer:ENSMUSP00000095932.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000098327Re-query CCDS DB by Protein ID:ENSMUSP00000095932
Original member Current member EBI ENSMUST00000166768.2 ENSMUSP00000130306.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000166768.2Link to Ensembl Protein Viewer:ENSMUSP00000130306.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000166768Re-query CCDS DB by Protein ID:ENSMUSP00000130306
Original member Current member NCBI NM_001357300.1 NP_001344229.1 Accepted alive Link to Nucleotide Sequence:NM_001357300.1Link to Protein Sequence:NP_001344229.1Re-query CCDS DB by Nucleotide ID:NM_001357300Re-query CCDS DB by Protein ID:NP_001344229Link to BLAST:NP_001344229.1
Original member Current member NCBI NM_001357301.1 NP_001344230.1 Accepted alive Link to Nucleotide Sequence:NM_001357301.1Link to Protein Sequence:NP_001344230.1Re-query CCDS DB by Nucleotide ID:NM_001357301Re-query CCDS DB by Protein ID:NP_001344230Link to BLAST:NP_001344230.1
Original member Current member NCBI NM_030176.3 NP_084452.2 Accepted alive Link to Nucleotide Sequence:NM_030176.3Link to Protein Sequence:NP_084452.2Re-query CCDS DB by Nucleotide ID:NM_030176Re-query CCDS DB by Protein ID:NP_084452Link to BLAST:NP_084452.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001344229.1 426 Q8BNN1-1 426 100% 0 0
NP_001344230.1 426 Q8BNN1-1 426 100% 0 0
NP_084452.2 426 Q8BNN1-1 426 100% 0 0

Chromosomal Locations for CCDS 22752.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 123233268 123234245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123235518 123235820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1281 nt):
ATGGGCAGCAGCTCACTGTCCGAGGACTATCGCCAGTGCCTGGAGCGCGAGCTGCGGCGCGGCCGCGCGG
GCGTTTGCGGCGACCCCTCGCTGCGCGCGGTGCTCTGGCAGATTCTGGTGGAAGACTTTGACCTGCACGG
GGCGCTACAGGACGATGCGCTAGCCCTGTTCACTGATGGCCTGTGGGGGCGGGCTGACCTGGCACCGGCC
CTCCAAGATCTGGCCCGCGCCTTTGAGCTCCTAGAGCTGGCCGCTGTGCACCTGTACCTGCTGCCCTGGA
GAAAGGAGTTCACCACTATCAAGACCTTCTCAGGGGGCTATGTGCATGTGCTGAAGGGTGTACTCTCTGA
GGAGCTCCTGACTCGAAGCTTCCAGAAGATGGGCTACGTGCGCAGGGACAACCACCGCCTAATGGTGACC
ACCCCACCCCCTGCCTGCCAGCTGGTGCAGGTGGCCCTAGGTTGCTTTGCTCTTCGGTTGGAGTGTGAGA
TCCTAAGTGAGGTCCTGACTCAGCTGGGTACAAGCGTACTACCAGCCGAGGAGCTGCTCCGAGCTCGACG
GGCTAGTGGGGATGTAGCCTCCTGTGTGGCCTGGCTGCAGCAACGCCTGGCCCAAGATGAGGAGCCACCA
CCTCTGCCCCCTCGGGGCACACCTGCCACTTATGGGGCCCCAGTGGACCTGTATCAGGACCTGCAGGAAG
ATGAGAGCTCAGAGGCCAGTCTGTATGGTGAGCCTTCCCCAGGGCTGGACTCGCCTCCTGTGGAGCTGGC
TTACAGGCCACCACTCTGGGAGCAGAGTGCCAAACTATGGGGTTCTGGAGGTCAGCCCTGGGAACCGCCA
GCTGATGATATGCATCGGGCCAGCAGCCCACCATATGGGGCTCTGGAAGAGGAGCTGGAGCCAGAACCCT
CTGCTTTCTCCTTCCTTTCTCTGCGCCGTGAGCTGAGTCGCTCAGGAGACTTAGCTCCCCCTGAGTCCCC
TTCAAGCCCCGGGCAAGCCAGCCCCCGACACAGGCAGGCAGAAGCAGCTGCATCCTCGGCCTATGGGCCT
GCTGTTGAGCCTCTGAGCTACCAGGCACACAGCTGCTTGAGCCCTGGCAACCTACCCACCCTCTGCTGTG
ACACCTGCCGCCAGCTCCATGCTACCCACTGCACTGCCCTATCTGCCTGCCGCCCGACTCATTCACTGCG
CATTCTTCTTGGTGACAACCAGAGACGCCTGTGGCTGCAACGAGCACAGGTGGATAACCTGCTCTATGAC
AGTCCTGGGGCCCATCCCTAG

Translation (426 aa):
MGSSSLSEDYRQCLERELRRGRAGVCGDPSLRAVLWQILVEDFDLHGALQDDALALFTDGLWGRADLAPA
LQDLARAFELLELAAVHLYLLPWRKEFTTIKTFSGGYVHVLKGVLSEELLTRSFQKMGYVRRDNHRLMVT
TPPPACQLVQVALGCFALRLECEILSEVLTQLGTSVLPAEELLRARRASGDVASCVAWLQQRLAQDEEPP
PLPPRGTPATYGAPVDLYQDLQEDESSEASLYGEPSPGLDSPPVELAYRPPLWEQSAKLWGSGGQPWEPP
ADDMHRASSPPYGALEEELEPEPSAFSFLSLRRELSRSGDLAPPESPSSPGQASPRHRQAEAAASSAYGP
AVEPLSYQAHSCLSPGNLPTLCCDTCRQLHATHCTALSACRPTHSLRILLGDNQRRLWLQRAQVDNLLYD
SPGAHP


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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