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Report for CCDS23406.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23406.1 Public Mus musculus 9 Plscr1l1 23 108 98 CCDS HistoryNCBI Gene:78459Re-query CCDS DB by CCDS ID:23406.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 23406.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000098477.7 ENSMUSP00000096077.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000098477.7Link to Ensembl Protein Viewer:ENSMUSP00000096077.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000098477Re-query CCDS DB by Protein ID:ENSMUSP00000096077
Original member Current member NCBI NM_001033184.3 NP_001028356.1 Accepted alive Link to Nucleotide Sequence:NM_001033184.3Link to Protein Sequence:NP_001028356.1Re-query CCDS DB by Nucleotide ID:NM_001033184Re-query CCDS DB by Protein ID:NP_001028356Link to BLAST:NP_001028356.1

Chromosomal Locations for CCDS 23406.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 92343627 92343683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 92347802 92347844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 92350926 92351146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 92352535 92352696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 92354545 92354706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 92357702 92357755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (699 nt):
ATGGCTATCAACACCACCTCATACGGAGTGCCACCTGGATTGGAATATTTACTTCATATAGATCATATTA
TGATTCAACAGCAGTTTGAGTTTGTGGAAGCCGTTTTAGGTTTTGAAACTGCTAACCGATATAAAATCAA
TGACAAACTGGGACAGAAGGTTTACTATGCTGCAGAAGACTTTAATTTCTTAACACTCAATTGCTGTGGG
GCCATTAGACCTTTCACCATGAGGATCTTTGATAACTCAGGTCGTGAAGTCATAACTCTACGAAGACCAC
TACGATGTGATTGTTGTTGCTGCCCCTGCTGCCTCCAGCAGATAGAAATACAAGCTCCTCCTGGTGTGCC
AGTGGGTTATGTTATTCAAACCTGGCACCCATGTCGGCCAAAGTTTACAGTTCAAAATGAGGAGAAACAG
GATGTTCTAAAAATTATTGGTCCAATCTGCGTGTGCAACATTGGAGGAAGCATAGATTTTGAGATCAAAT
CTCTTGATGAAGAATTCGTGGTTGGCAGGATTTCCAAGCACTGGTCTGGTATTCTGAAGGAGATACTGAC
AGATGTAGACACTTTTGGGATCCAGTTCCCTTTAGACCTCGATGTAAAGATGAAGGCGGTGATGCTTGGT
GCTTGTTTTCTCATAGACTTCATGTTTTTTGAAAGTGGTGGAGGCCAGAGACCAAAACTTTTCTGGTAA

Translation (232 aa):
MAINTTSYGVPPGLEYLLHIDHIMIQQQFEFVEAVLGFETANRYKINDKLGQKVYYAAEDFNFLTLNCCG
AIRPFTMRIFDNSGREVITLRRPLRCDCCCCPCCLQQIEIQAPPGVPVGYVIQTWHPCRPKFTVQNEEKQ
DVLKIIGPICVCNIGGSIDFEIKSLDEEFVVGRISKHWSGILKEILTDVDTFGIQFPLDLDVKMKAVMLG
ACFLIDFMFFESGGGQRPKLFW


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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