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Report for CCDS4965.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4965.1 Public Homo sapiens 6 PTP4A1 24 110 108 CCDS HistoryNCBI Gene:7803Re-query CCDS DB by CCDS ID:4965.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4965.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000626021.3 ENSP00000485687.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000626021.3Link to Ensembl Protein Viewer:ENSP00000485687.1Re-query CCDS DB by Nucleotide ID:ENST00000626021Re-query CCDS DB by Protein ID:ENSP00000485687
Original member Current member EBI ENST00000648894.1 ENSP00000497588.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000648894.1Link to Ensembl Protein Viewer:ENSP00000497588.1Re-query CCDS DB by Nucleotide ID:ENST00000648894Re-query CCDS DB by Protein ID:ENSP00000497588
Original member Current member EBI ENST00000673199.1 ENSP00000500859.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000673199.1Link to Ensembl Protein Viewer:ENSP00000500859.1Re-query CCDS DB by Nucleotide ID:ENST00000673199Re-query CCDS DB by Protein ID:ENSP00000500859
Original member Current member EBI ENST00000672924.1 ENSP00000500952.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000672924.1Link to Ensembl Protein Viewer:ENSP00000500952.1Re-query CCDS DB by Nucleotide ID:ENST00000672924Re-query CCDS DB by Protein ID:ENSP00000500952
Original member Current member NCBI NM_001385254.1 NP_001372183.1 Accepted alive Link to Nucleotide Sequence:NM_001385254.1Link to Protein Sequence:NP_001372183.1Re-query CCDS DB by Nucleotide ID:NM_001385254Re-query CCDS DB by Protein ID:NP_001372183Link to BLAST:NP_001372183.1
Original member Current member NCBI NM_001385255.1 NP_001372184.1 Accepted alive Link to Nucleotide Sequence:NM_001385255.1Link to Protein Sequence:NP_001372184.1Re-query CCDS DB by Nucleotide ID:NM_001385255Re-query CCDS DB by Protein ID:NP_001372184Link to BLAST:NP_001372184.1
Original member Current member NCBI NM_001385256.1 NP_001372185.1 Accepted alive Link to Nucleotide Sequence:NM_001385256.1Link to Protein Sequence:NP_001372185.1Re-query CCDS DB by Nucleotide ID:NM_001385256Re-query CCDS DB by Protein ID:NP_001372185Link to BLAST:NP_001372185.1
Original member Current member NCBI NM_001385257.1 NP_001372186.1 Accepted alive Link to Nucleotide Sequence:NM_001385257.1Link to Protein Sequence:NP_001372186.1Re-query CCDS DB by Nucleotide ID:NM_001385257Re-query CCDS DB by Protein ID:NP_001372186Link to BLAST:NP_001372186.1
Original member Current member NCBI NM_001385258.1 NP_001372187.1 Accepted alive Link to Nucleotide Sequence:NM_001385258.1Link to Protein Sequence:NP_001372187.1Re-query CCDS DB by Nucleotide ID:NM_001385258Re-query CCDS DB by Protein ID:NP_001372187Link to BLAST:NP_001372187.1
Original member Current member NCBI NM_001385259.1 NP_001372188.1 Accepted alive Link to Nucleotide Sequence:NM_001385259.1Link to Protein Sequence:NP_001372188.1Re-query CCDS DB by Nucleotide ID:NM_001385259Re-query CCDS DB by Protein ID:NP_001372188Link to BLAST:NP_001372188.1
Original member Current member NCBI NM_001385260.1 NP_001372189.1 Accepted alive Link to Nucleotide Sequence:NM_001385260.1Link to Protein Sequence:NP_001372189.1Re-query CCDS DB by Nucleotide ID:NM_001385260Re-query CCDS DB by Protein ID:NP_001372189Link to BLAST:NP_001372189.1
Original member Current member NCBI NM_001385262.2 NP_001372191.1 Accepted alive Link to Nucleotide Sequence:NM_001385262.2Link to Protein Sequence:NP_001372191.1Re-query CCDS DB by Nucleotide ID:NM_001385262Re-query CCDS DB by Protein ID:NP_001372191Link to BLAST:NP_001372191.1
Original member Current member NCBI NM_001385267.2 NP_001372196.1 Accepted alive Link to Nucleotide Sequence:NM_001385267.2Link to Protein Sequence:NP_001372196.1Re-query CCDS DB by Nucleotide ID:NM_001385267Re-query CCDS DB by Protein ID:NP_001372196Link to BLAST:NP_001372196.1
Original member Current member NCBI NM_003463.5 NP_003454.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003463.5Link to Protein Sequence:NP_003454.1Re-query CCDS DB by Nucleotide ID:NM_003463Re-query CCDS DB by Protein ID:NP_003454Link to BLAST:NP_003454.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001372183.1 173 Q93096 173 100% 0 0
NP_001372184.1 173 Q93096 173 100% 0 0
NP_001372185.1 173 Q93096 173 100% 0 0
NP_001372186.1 173 Q93096 173 100% 0 0
NP_001372187.1 173 Q93096 173 100% 0 0
NP_001372188.1 173 Q93096 173 100% 0 0
NP_001372189.1 173 Q93096 173 100% 0 0
NP_001372191.1 173 Q93096 173 100% 0 0
NP_001372196.1 173 Q93096 173 100% 0 0
NP_003454.1 173 Q93096 173 100% 0 0

Chromosomal Locations for CCDS 4965.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 63576881 63576985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 63578437 63578529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 63578898 63579028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 63579257 63579331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 63580057 63580174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (522 nt):
ATGGCTCGAATGAACCGCCCAGCTCCTGTGGAAGTCACATACAAGAACATGAGATTTCTTATTACACACA
ATCCAACCAATGCGACCTTAAACAAATTTATAGAGGAACTTAAGAAGTATGGAGTTACCACAATAGTAAG
AGTATGTGAAGCAACTTATGACACTACTCTTGTGGAGAAAGAAGGTATCCATGTTCTTGATTGGCCTTTT
GATGATGGTGCACCACCATCCAACCAGATTGTTGATGACTGGTTAAGTCTTGTGAAAATTAAGTTTCGTG
AAGAACCTGGTTGTTGTATTGCTGTTCATTGCGTTGCAGGCCTTGGGAGAGCTCCAGTACTTGTTGCCCT
AGCATTAATTGAAGGTGGAATGAAATACGAAGATGCAGTACAATTCATAAGACAAAAGCGGCGTGGAGCT
TTTAACAGCAAGCAACTTCTGTATTTGGAGAAGTATCGTCCTAAAATGCGGCTGCGTTTCAAAGATTCCA
ACGGTCATAGAAACAACTGTTGCATTCAATAA

Translation (173 aa):
MARMNRPAPVEVTYKNMRFLITHNPTNATLNKFIEELKKYGVTTIVRVCEATYDTTLVEKEGIHVLDWPF
DDGAPPSNQIVDDWLSLVKIKFREEPGCCIAVHCVAGLGRAPVLVALALIEGGMKYEDAVQFIRQKRRGA
FNSKQLLYLEKYRPKMRLRFKDSNGHRNNCCIQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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