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Report for CCDS39487.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39487.1 Public Mus musculus 6 Stk31 23 108 98 CCDS HistoryNCBI Gene:77485Re-query CCDS DB by CCDS ID:39487.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39487.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000024171.13 ENSMUSP00000024171.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000024171.13Link to Ensembl Protein Viewer:ENSMUSP00000024171.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000024171Re-query CCDS DB by Protein ID:ENSMUSP00000024171
Original member Current member NCBI NM_029916.2 NP_084192.2 Accepted alive Link to Nucleotide Sequence:NM_029916.2Link to Protein Sequence:NP_084192.2Re-query CCDS DB by Nucleotide ID:NM_029916Re-query CCDS DB by Protein ID:NP_084192Link to BLAST:NP_084192.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_084192.2 1018 Q99MW1 1018 100% 0 0

Chromosomal Locations for CCDS 39487.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 49395635 49395684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 49398061 49398107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 49398196 49398248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 49404766 49404864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 49406750 49406824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 49409053 49409211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 49417189 49417547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 49419155 49419329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 49421684 49421799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 49423376 49423535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 49425696 49425818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 49437350 49437532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 49437973 49438089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 49438449 49438568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 49439099 49439230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 49440857 49440958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 49442231 49442311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 49445168 49445293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 49446094 49446219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 49446391 49446477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 49447244 49447393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 49457656 49457778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 49465469 49465537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 49469128 49469352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3057 nt):
ATGTGGGGCCAGCGGCTCTTTGCTGGGACGGCTGTGGCGCAAAGTGTAAGTTTTCCAGGACTTGTCCAAA
TGGATGAAGATACACATTACAATAAAGTTGAAGATGTTGTTGGAAGTCATGTAGAAGATGCAGTAACATT
TTGGGCCCAGAATGTCAGTAAAAATAAGGATATTATGAAGATTGGTTGTTCACTCTCAGAAGTTTGTCCT
CTTGCTAATTCAGTTTTTGGCAATCTTGATCCTAAGAAGATTTATGGTGGATTGTTTTCTGAAGATAAGT
GCTGGTACAGATGCAAAGTGCTAAAAACTATCAGCGATGATAAGTGCCTGGTGAGGTACATTGACTATGG
AAATACTGAAATTCTAAACCGATCTGATATAGTAGAAATTCCTCCGGAGCTACAATTTTCTAGTATTGCC
AAGAAGTATAGACTTTGGGGACTACAGATTCCTTCTGGCCAAGAAGTTACCCAGTTTGATCAGGGTAGAA
CATTTTTGGGGAGTTTGATTTTTGAAAAAGAAATTAAAATGAGAATAAAAGCAACATATCAAGATGGAAC
AGTTATTGCTCAGGCTGAGTATGGCACTGTCGATATAGGGGAAGAAGTGGCAAAGAAAGGATTTGCAGAA
AAGTGCAGACTGACCTCAGGCATTGATGCCTGTGAGGCAAAGAAACCTGATCCTAATCAGCTTGCTCTCA
GGAGTCTCAAGAACCCTATCCCCCTGTGGGGGCGCAGATCAAACCAGTCAACCTTCAGCAGGCCAAAGGG
GCATTTTAACGGGAGGCTGACTCTTGATGTGAAGTATGAGACCAGTGCAGGCAATCACGTGACATTTCCA
AAGGAAAGTTTGGCTGCTGGTGACTTTAATTTAGGGTCTAATGTCAGCTTGGCAAAAATTAAACAGGACC
AGAAACTTATTGAAGAGAATGAAAAGCTTAAAACAGAGAAAGAGGTTCTTCTAGAAAATTACAAAGCATT
AGAATTAAAAGTTGAGCAGACTGCCCAGGAGCTGCAGCAAGAGAAAACAGCTACCATGGATCTGACTAAG
CATTTAGAAAGCACTCTGAAGACGTGTGTAGGAACCAGGCTGAAGAATTTGGCAGCTAAAGTAGAACTAT
TGAAAGAAATTAGGCATATTAACATCAGTATTCGCTTTGGAAATGACCTTTCAGATGCTATGCAAGTGTT
GGATGAAGGGTCCTTTACTACTCTAGCATCTTTGAATGAGTTAGAGAAAATTTGGGCTGAATATAATGTT
GCTCAGGAGAAGATCCAAACTTGTCTTAATGAGAATGAAGGTAATATTTTGATTGCTGAAAGAAATGAAG
TACAACAGAAGCTGTTCGTGGCTGTAGATGTTTTTATTCTGGAAGTAGATGACTTACCACTTGATAAACG
CTTAAAAACATTGCAGGACTTAGCAACTTCTTTAGAATCAGTGTATGGAAAGGCCAAAGAAGGAACTAAT
AACTCTGAAGAAACACTTAGAAAGTTTTATGACTGGCAGTGTACCAAAAGAGAAGAGTTCGCCAGTATTA
GGAGTGAAACAGAGGCATCTCTGCAGCACCTTGTGGCATGGTTCCAGAGCAGCCAGAAGGTTTTTGATCT
GTCCTTGGATGAACCATTGACTTCAGAAGACCTGATTGGTAATATTGATGAAATTCTAGAGAAGACTGAG
TCATGTGTCTGCAAAGAGCTAGAGCTGTCTCTCATTGAGCAAGGTGTCATAGACAAGGAGATTATTTTAA
GTACATACAGTCAAGTGCTGCAAAAGATCCATTCTGAGGAAAAGTTCATTGCCACCTTGCTGTCCAAGTA
TAAGGACAGTGTTGAGTTTAAAAAGCAGATGATTGACTGTTTAAATAAGAACCCCAATGTGGATTACTTG
CTTTCTATTAAGAAGACATTGAAAGGCTTAAAAGCACAACTGAGATGGAAATTGGTTGAGAAGAGTAATT
TGGAAGAATCTGATGACCATGATGGAACTGAAATTGAGAAAATAAAGCAAGAAATAACTCAATTGCGAAA
TAGTGTTTTCCAGGAAATTTATCATGAGAGGGAGGAATATGAGAAGCTGAATAGCTTGACCCAGAAATGG
TTCCCTGAGCTGCCTCTGCTGTATCCTGAAATAGGATTGCTTAAATATATGAATTCTGGTGGTCTTCTTA
CTATGAGCTTAGAGCGGGACCTTCTTGACACTGAGCCCATGAAGGAACTTAGCAGCAAGCGTCCTCTGGT
GTGCTCCGAGGTTAATGGGCAGCCAGTTCTCTTAAAGGGCTATTCCGTGGATGTTGACACAGAAGGCAGG
GTGATTCAGAGAGCAGCCTCTTACCATAGAGCTTGTGGATATGCTAAAGAAGAGTCTGGGTTACTGCCAT
TAATATTCTTGTTTTTGTGTAAGTCTGATCCTGTTGCCTATCTGATGGTCCCATATTATCCTAAGGCAAA
CCTGAGTGCAGTTCAAGCCAGTATGCCTTTAACTTCAGAAGAAGCTTTAAAAGTCATGAAAGGTGTTGCC
CGAGGACTGCATACATTGCATAGTGCTAACATAATTCATGGATCACTTCATCAGAACAATGTATTTGCCT
TAAATCGTGAACAAGGGATTGTTGGAGATTATGACTTCACCAAATCTGAGAGCCAGCGAGCTTCAGTCAA
CGCGATGGTTGGTGGATTGAGTTTGCTCTCACCTGAATTGAAAACTGGAAAACCTCCTTCTGCAAGTTCA
GACTTATATGCTTATGGTTGCCTTTTCTTATGGCTTTCTGTTCAAAATCAAGAGTTTGAGACAAATGAAG
ATGGAATTCCAAAAGTAGATCAGTTTCATTTGGATGATAATGTCAAGTCCCTCCTTTGTAGCTTGATATA
TTTTAGAAGTTCAATGACTGCTGAGCAGGTTTTGAATGCTGAATGTTTCTTGCTTCCAAAGGGGAAATCA
GTTCCAATCCCAGAAAAAGAGATTGAATGTACTCAGCATAGCAGAGAAGATGAATCAAAGATGGAGAGTC
TGGATAGATATAGTGAAAAGACAAGAAATGGTGAAGCCAACCCTTGA

Translation (1018 aa):
MWGQRLFAGTAVAQSVSFPGLVQMDEDTHYNKVEDVVGSHVEDAVTFWAQNVSKNKDIMKIGCSLSEVCP
LANSVFGNLDPKKIYGGLFSEDKCWYRCKVLKTISDDKCLVRYIDYGNTEILNRSDIVEIPPELQFSSIA
KKYRLWGLQIPSGQEVTQFDQGRTFLGSLIFEKEIKMRIKATYQDGTVIAQAEYGTVDIGEEVAKKGFAE
KCRLTSGIDACEAKKPDPNQLALRSLKNPIPLWGRRSNQSTFSRPKGHFNGRLTLDVKYETSAGNHVTFP
KESLAAGDFNLGSNVSLAKIKQDQKLIEENEKLKTEKEVLLENYKALELKVEQTAQELQQEKTATMDLTK
HLESTLKTCVGTRLKNLAAKVELLKEIRHINISIRFGNDLSDAMQVLDEGSFTTLASLNELEKIWAEYNV
AQEKIQTCLNENEGNILIAERNEVQQKLFVAVDVFILEVDDLPLDKRLKTLQDLATSLESVYGKAKEGTN
NSEETLRKFYDWQCTKREEFASIRSETEASLQHLVAWFQSSQKVFDLSLDEPLTSEDLIGNIDEILEKTE
SCVCKELELSLIEQGVIDKEIILSTYSQVLQKIHSEEKFIATLLSKYKDSVEFKKQMIDCLNKNPNVDYL
LSIKKTLKGLKAQLRWKLVEKSNLEESDDHDGTEIEKIKQEITQLRNSVFQEIYHEREEYEKLNSLTQKW
FPELPLLYPEIGLLKYMNSGGLLTMSLERDLLDTEPMKELSSKRPLVCSEVNGQPVLLKGYSVDVDTEGR
VIQRAASYHRACGYAKEESGLLPLIFLFLCKSDPVAYLMVPYYPKANLSAVQASMPLTSEEALKVMKGVA
RGLHTLHSANIIHGSLHQNNVFALNREQGIVGDYDFTKSESQRASVNAMVGGLSLLSPELKTGKPPSASS
DLYAYGCLFLWLSVQNQEFETNEDGIPKVDQFHLDDNVKSLLCSLIYFRSSMTAEQVLNAECFLLPKGKS
VPIPEKEIECTQHSREDESKMESLDRYSEKTRNGEANP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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