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Report for CCDS23755.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23755.1 Public Mus musculus 10 Tmem200a 23 108 98 CCDS HistoryNCBI Gene:77220Re-query CCDS DB by CCDS ID:23755.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23755.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000066049.6 ENSMUSP00000064080.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000066049.6Link to Ensembl Protein Viewer:ENSMUSP00000064080.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000066049Re-query CCDS DB by Protein ID:ENSMUSP00000064080
Original member Current member EBI ENSMUST00000218232.1 ENSMUSP00000151861.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000218232.1Link to Ensembl Protein Viewer:ENSMUSP00000151861.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000218232Re-query CCDS DB by Protein ID:ENSMUSP00000151861
Original member Current member NCBI NM_001358814.1 NP_001345743.1 Accepted alive Link to Nucleotide Sequence:NM_001358814.1Link to Protein Sequence:NP_001345743.1Re-query CCDS DB by Nucleotide ID:NM_001358814Re-query CCDS DB by Protein ID:NP_001345743Link to BLAST:NP_001345743.1
Original member Current member NCBI NM_029881.4 NP_084157.2 Accepted alive Link to Nucleotide Sequence:NM_029881.4Link to Protein Sequence:NP_084157.2Re-query CCDS DB by Nucleotide ID:NM_029881Re-query CCDS DB by Protein ID:NP_084157Link to BLAST:NP_084157.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001345743.1 491 Q8C817 491 100% 0 0
NP_084157.2 491 Q8C817 491 100% 0 0

Chromosomal Locations for CCDS 23755.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 25992894 25994369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1476 nt):
ATGATAGCCACTGGTGGGGTCATCACCGGCCTGGCGGCCTTGAAGCGGCAGGACTCTGCCAGGTCTCAGC
AACACATTAACCTCAGCCCACTGCCTGCTACCCAGGATCAGAAACCCGTCAGACGGCGCCCACGAGCAGA
TGTTGTGGTGGTCCGTGGGAAAATCCGACTTTATTCTCCATCTGGCTTTTTCCTCATTCTGGGAGTGCTG
GTGTCCATCATAGGAATCGCCATGGCAGTCCTTGGATATTGGCCCCAGAAGGAGCACTTCATTGACGCAG
AGACCACGCTGTCCACCAATGAGACCCAAGTGGTTCGGAACCAGGGCGGTGTGGTGGTGCGCTTCTTTGA
GCAGCATCTACATTCCGATAAGATGAAGATGCTTGGCCCGTTCACCATGGGCATCGGCATCTTCATTTTC
ATCTGCGCCAATGCCATTCTTCATGAGAACCGCGACAAAGAAACCAAAATCATCCACATGAGGGATATCT
ACTCCACAGTCATCGACATCCACACTCTGAGACTCAAGGAGCAGAAGCAGGCAAATGGCCTATACGCAGG
CTTGCTGGGAGACACAGAAGTGAAGCAGAACGGCAGCCCCTGTGCATCCAGGCTGGCTGCCACCACCTTG
GCCTCCTTCTCAGGGATGCGGAACAGCTTTCGGGTGGACAGCTCTGTGGAGGAGGATGAACTGATGTTGA
CTGAAAGTAAGAGCCTGGGGCACCTCATGCCCCCGTTGCTATCTGACAGTGCAGTCTCTGTCTTTGGCCT
TTATCCACCTCCAGCCAAGGCCACCGATGACAAGGCCAGCAGCTCCAAGAAGTGTGACACCAAATCGATT
GTGTCGTCATCCATCAGTGCTTTCACGCTACCTGTGATCAAGCTTAATAACTGTGTCATTGACGAGCCCA
GTATAGACAGCATCACTGAGGTCGCAGACAACCTCAAAACTAGGTCCAGGAATCTTTCCATGGATTCCCT
CGTGGTCCCACTGCCGAGCTCTGGTGAGTCCTTTCAGCCTGCTGTCACGTTACTCCCAAGGAACAATTCC
GTTGGGGAGTCCCTATCTAGTCAATACAAGTCCTCTGTGGCTCTGGGCCCCGGGACTGGACAGCTCTTGT
CTCCGGGAGCTGCAAGAAGACAGTTTGGCTCCAACACATCCTTGCATTTGCTCTCTTCTCACTCCAAATC
CCTAGACTTAGACAGAGGTCCTTCCACACTCACCGTGCACGCAGAACAAAGGAAGCACCCGAGCTGGCCC
CGGTTGGATCGGAGCAACAGCAAAGGGTATATGAGACTGGAGAACAAAGAGGACCCGATGGATCGGTTGC
TCGTTCCCCAAACAGCAATCAAAAAAGATTTTACCAATAAAGAGAAACTTCTCATGATCTCAAGATCTCA
TAACAACTTGAGTTTTGAACATGATGAGTTTTTGAGTAACAACTTGAAGCGAGGAACTTCTGAGACAAGG
TTTTAG

Translation (491 aa):
MIATGGVITGLAALKRQDSARSQQHINLSPLPATQDQKPVRRRPRADVVVVRGKIRLYSPSGFFLILGVL
VSIIGIAMAVLGYWPQKEHFIDAETTLSTNETQVVRNQGGVVVRFFEQHLHSDKMKMLGPFTMGIGIFIF
ICANAILHENRDKETKIIHMRDIYSTVIDIHTLRLKEQKQANGLYAGLLGDTEVKQNGSPCASRLAATTL
ASFSGMRNSFRVDSSVEEDELMLTESKSLGHLMPPLLSDSAVSVFGLYPPPAKATDDKASSSKKCDTKSI
VSSSISAFTLPVIKLNNCVIDEPSIDSITEVADNLKTRSRNLSMDSLVVPLPSSGESFQPAVTLLPRNNS
VGESLSSQYKSSVALGPGTGQLLSPGAARRQFGSNTSLHLLSSHSKSLDLDRGPSTLTVHAEQRKHPSWP
RLDRSNSKGYMRLENKEDPMDRLLVPQTAIKKDFTNKEKLLMISRSHNNLSFEHDEFLSNNLKRGTSETR
F


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 Genome Browser Links:   Ensembl Genome Browser
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