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Report for CCDS52692.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52692.1 Public Mus musculus 8 1700018B08Rik 23 108 98 CCDS HistoryNCBI Gene:76405Re-query CCDS DB by CCDS ID:52692.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52692.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034265.10 ENSMUSP00000034265.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034265.10Link to Ensembl Protein Viewer:ENSMUSP00000034265.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000034265Re-query CCDS DB by Protein ID:ENSMUSP00000034265
Original member Current member NCBI NM_029597.2 NP_083873.1 Accepted alive Link to Nucleotide Sequence:NM_029597.2Link to Protein Sequence:NP_083873.1Re-query CCDS DB by Nucleotide ID:NM_029597Re-query CCDS DB by Protein ID:NP_083873Link to BLAST:NP_083873.1

Chromosomal Locations for CCDS 52692.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 121531023 121531041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 121531698 121531914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 121533695 121533731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 121535423 121535569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 121539867 121540007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 121540537 121540580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 121541719 121541755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (642 nt):
ATGTCAGGAGCAGGCCTTCAGGCATGGCTGTATCCAGGAAGGGTTCGTTTCAGACCTTTGGAAAGGATGT
GTGCATCACGGGTGTCCTCCGGCCTCCGCACTGTTCCCCAGGAGTATGCGTGTTGCCAATGCTACACCAA
GTTTGGGGGCCACCTGCCTGTGCCCCGGGCTGATGCACTGCTGCCCTACTGGGTGCCTTTGTCCCTGAGA
CCACGAAAGCAGGTCTCGAAGATGATGCGGTGTTACATCCCCAGAGCCATGAAGTCCTGCCGGTGCTCCT
GCCACTGCTTTGGGGGCCGCCTTCCGATGCCCAGGGACAGGGCTGTCATGCCCTACTGGGTGCCCCAGGG
GCTGAGGTCACAGAAGAAGGTGTTGAAGAGGCTGGAGAATGTGGAAGACACTCCAGGTCGCCCCCAGGAC
TCAAGCAGATGGTATGGCTGCTGGCGGGTCTGTGGGAACCAACATCTCCTCCTCAAGTGGCAGCAGCTCC
AGGCCCTTTATCAAGATGAGCTGCCAGGTCTTCAGGAGGACGAGCCGCATGCTGGCCGCTTAGGCCTCCT
CCCCATCAGCTTCAATCTCCTGAGCCTGCTGCAGGCAGTCCTGAGGGCCATCATAGCCATTTGTCATTTG
TTCTGGGACTGA

Translation (213 aa):
MSGAGLQAWLYPGRVRFRPLERMCASRVSSGLRTVPQEYACCQCYTKFGGHLPVPRADALLPYWVPLSLR
PRKQVSKMMRCYIPRAMKSCRCSCHCFGGRLPMPRDRAVMPYWVPQGLRSQKKVLKRLENVEDTPGRPQD
SSRWYGCWRVCGNQHLLLKWQQLQALYQDELPGLQEDEPHAGRLGLLPISFNLLSLLQAVLRAIIAICHL
FWD


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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