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Report for CCDS25000.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25000.1 Public Mus musculus 11 Tax1bp3 23 108 98 CCDS HistoryNCBI Gene:76281Re-query CCDS DB by CCDS ID:25000.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 25000.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000040687.11 ENSMUSP00000047410.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000040687.11Link to Ensembl Protein Viewer:ENSMUSP00000047410.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000040687Re-query CCDS DB by Protein ID:ENSMUSP00000047410
Original member Current member NCBI NM_029564.2 NP_083840.1 Accepted alive Link to Nucleotide Sequence:NM_029564.2Link to Protein Sequence:NP_083840.1Re-query CCDS DB by Nucleotide ID:NM_029564Re-query CCDS DB by Protein ID:NP_083840Link to BLAST:NP_083840.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083840.1 124 Q9DBG9 124 100% 0 0

Chromosomal Locations for CCDS 25000.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 73177304 73177342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 73180389 73180508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 73180731 73180808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 73181088 73181225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (375 nt):
ATGTCCTACACCCCGGGCCAGCCTGTCACCGCCGTAGTGCAAAGAGTTGAAATTCATAAGTTGCGTCAAG
GTGAGAACTTAATCTTGGGCTTCAGTATTGGAGGTGGGATCGACCAGGACCCGTCTCAGAATCCCTTCTC
GGAAGATAAAACAGACAAGGGCATTTACGTCACACGAGTATCAGAGGGAGGTCCTGCTGAAATTGCTGGG
CTGCAGATTGGAGACAAGATCATGCAGGTGAATGGCTGGGACATGACCATGGTCACTCACGACCAGGCTC
GGAAGCGGCTCACCAAGCGCTCGGAGGAGGTGGTCCGCCTGCTGGTGACTCGGCAGTCTCTACAAAAGGC
TGTACAGCAGTCCATGCTGTCTTAG

Translation (124 aa):
MSYTPGQPVTAVVQRVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAG
LQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVTRQSLQKAVQQSMLS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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