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Report for CCDS20063.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20063.1 Public Mus musculus 6 Gstk1 23 108 98 CCDS HistoryNCBI Gene:76263Re-query CCDS DB by CCDS ID:20063.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 20063.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031897.7 ENSMUSP00000031897.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031897.7Link to Ensembl Protein Viewer:ENSMUSP00000031897.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000031897Re-query CCDS DB by Protein ID:ENSMUSP00000031897
Original member Current member NCBI NM_029555.2 NP_083831.1 Accepted alive Link to Nucleotide Sequence:NM_029555.2Link to Protein Sequence:NP_083831.1Re-query CCDS DB by Nucleotide ID:NM_029555Re-query CCDS DB by Protein ID:NP_083831Link to BLAST:NP_083831.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083831.1 226 Q9DCM2 226 100% 0 0

Chromosomal Locations for CCDS 20063.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 42246022 42246093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42246550 42246631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42246811 42246939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42247484 42247584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42247734 42247769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42249379 42249495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42249839 42249932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42250230 42250279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (681 nt):
ATGGGGCCGGCGCCGCGCATCCTGGAACTCTTCTACGACGTGCTGTCCCCGTACTCCTGGCTGGGCTTTG
AGGTCCTATGCAGATACCAACACCTCTGGAATATAAAGCTGCAGTTGCGGCCCACTTTAATCGCTGGGAT
CATGAAAGACAGCGGAAACCAACCACCTGCTATGGTTCCCCGAAAAGGCCAGTACATCTTCAAAGAGATT
CCTCTCCTGAAGCAGTTCTTCCAGGTTCCCCTCAACATACCCAAGGATTTCTTTGGTGAGACTGTGAAGA
AAGGAAGTATAAATGCCATGCGCTTCCTCACCACTGTAAGCATGGAGCAACCAGAGATGCTGGAGAAGGT
GTCCAGAGAGATATGGATGCGTGTATGGTCTCGAGATGAAGATATCACGGAGTATCAGAGCATTCTGGCT
GCAGCAGTGAAGGCTGGAATGTCCACAGCGCAAGCCCAACACTTTCTGGAGAAGATCTCCACACAACAGG
TGAAGAACAAGCTCATTGAGAACACGGATGCAGCCTGCAAATATGGGGCCTTTGGGCTACCCACCACTGT
TGCCCATGTGGATGGTAAAACCTACATGTTATTTGGGTCTGACCGCTTGGAGTTGCTAGCTTACCTGCTA
GGAGAGAAGTGGATGGGCCCTGTACCCCCAACTGCGAATGCCAGACTTTAA

Translation (226 aa):
MGPAPRILELFYDVLSPYSWLGFEVLCRYQHLWNIKLQLRPTLIAGIMKDSGNQPPAMVPRKGQYIFKEI
PLLKQFFQVPLNIPKDFFGETVKKGSINAMRFLTTVSMEQPEMLEKVSREIWMRVWSRDEDITEYQSILA
AAVKAGMSTAQAQHFLEKISTQQVKNKLIENTDAACKYGAFGLPTTVAHVDGKTYMLFGSDRLELLAYLL
GEKWMGPVPPTANARL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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