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Report for CCDS16983.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16983.1 Public Mus musculus 2 Tti1 23 108 98 CCDS HistoryNCBI Gene:75425Re-query CCDS DB by CCDS ID:16983.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16983.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029179.10 ENSMUSP00000029179.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029179.10Link to Ensembl Protein Viewer:ENSMUSP00000029179.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000029179Re-query CCDS DB by Protein ID:ENSMUSP00000029179
Original member Current member EBI ENSMUST00000109522.1 ENSMUSP00000105148.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109522.1Link to Ensembl Protein Viewer:ENSMUSP00000105148.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000109522Re-query CCDS DB by Protein ID:ENSMUSP00000105148
Original member Current member NCBI NM_029282.2 NP_083558.1 Accepted alive Link to Nucleotide Sequence:NM_029282.2Link to Protein Sequence:NP_083558.1Re-query CCDS DB by Nucleotide ID:NM_029282Re-query CCDS DB by Protein ID:NP_083558Link to BLAST:NP_083558.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083558.1 1085 Q91V83 1085 100% 0 0

Chromosomal Locations for CCDS 16983.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 157982274 157982460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 157992968 157993055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 157993354 157993558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 157995381 157995521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 157997077 157997225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 158000620 158000808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 158007019 158009317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3258 nt):
ATGGCGGTGTTTGACACTCCTGAGGAGGCTTTTGGCGTCTTACGTCCGGTCTGTGTTCAGCTCACAAAGA
CCCAGACAGTGGAGAATGTGGAGCATCTGCAGACACAGTTACAAGCCATAAGTGACACTGCTCTTCAGGA
ACTACAGCAGTACATCCTCTTCCCTTTGCGATTTGCCCTGAAGACCCCAGGGCCCAAAAGAGAGCGCCTG
GTGCAGAGTGTGGTGGAATGTCTCACCTTTGTCCTCTCTTCCACATGTGTGAGAGAGCAGGAGCTTCTGC
AGGAACTCTTCTCGGAGCTTTCTGCCTGTCTGTACTCTCCCAGCTCCCAGAAACCCGCAGCTTTGTCAGA
GGAGTTGAAATTGGCTGTCATCCAGGGACTTAGCACCTTAATGCACTCAGCTTACAGGGACATCATTCTG
ACTTTTTATGAGCCCTCCATTCTGCCTCGTTTAGGATTTGCTGTGTCTTTACTGTTAGGATTGGCAGAGC
AGGAGAAGTCAAAACAGATTAAAATTGCTGCCTTACAGTGTCTGCAGGTTCTCCTCCTTCAGTGTGATTG
TCAGGACCATCCAAGGCCCTTGGATGAACTGGAGCAGCAGCAGCTGGGGGATTTGTTGGCATCTTTCTTA
CCTGGGATCTCAACTGCGCTGACCAGAATCATCACAGGAGACTTTAAACAAGGTCACAGCATTGTCGTGT
CTTCTCTAAAGGTCTTTTACAAGACAGTGGGCTTCATCATGGCTGATGAACAGCTCACAAGGATTCCAAA
GGCCCAAGCAAAACCTGTAGTTGAGCACAGAGTAGCAGCCCTGATGATTCACAGAGAAGCAGACTGGGTA
AAAAGTACTGGTGACAAGCTGGCCATCTTTATTAAAAAGATAATTGACTGTGTCTCCGTTCACCCACACT
GGAAGGTGAGGCTGGAACTGGTAGAGTTTGTGGAAATCCTGCTTTTGAAGTGCACTCAGTCCCTGGTTGA
ATCCACGGGACCCCTCTTGAAGGTGTTAGTTGGCCTAGTGAATGATGAAAGTCCGGAAGTCCAGGCCCGG
TGCAGTACAGTGCTGAGGCGTCTTGCAGATCAGAAAGTAGTAGTGGGCAGCAGAGCCTTGGCTGACATCT
TGTCAGAAAGCCTGCATTCACTGGCCACGTCTCTTCCCCGCCTGATGAACACACAGGATGATCAGGGCAA
ATTCTCTACCCTTTCCCTGTTACTTGGGTATCTGAAACTGTTGGGCCCCAAAGTGCATGTGATTCTCAAT
TCTGTGGCCCATGTGCAACGCCTTTCCAGGGCCCTCATCCAAGTACTGGAGCTAGAGGTGACTGATGTCA
AGATGGTGGAAGAGCGGCGCTGGAACTCTGATAACCTGAGTGCTTCTGCAGAGGTCTCAGCTGCACGGCC
ATGGAGCAGAGTCCAGAGGCGATACTTCCGATGCTTCACTGACGAGAGGGTCTTCCTGCTCCTTCGGAAG
ATCTGTCAGCTCCTGGGTTATTATGGGGACCTGTATTTGCTTGTGGATCACTTTATGGAACTGTACCATA
CATCTGTAGTTTATCGGAAGCAAGCTGCCATGATCCTTAATGAACTGGTTGTAGGGGCTGCTGGACTGGA
TGTAGAAGATATTCATAACAAATGTCCAAGCATGGGCCCAGAGGAGTTGAGAGAGATTGTGAAATCTATA
CTAGAGGAATACACAAGCCAAGAAAACTGGTACTTGATTACCTGTTTTGAAGCTGAGGAGGGGGAGGAGG
TGATGATGAAGCAGCAAGGCTTCCAGGCTGTCACATCTGGTGTCCACACCTGCCAAGTTGTATCTTTTCC
AGCCCTGTCAAAGCCGAGTCCCACTATCTGCTCCATGAACAGTAACATCTGGCAGATATGCATTCAGTTG
GAAGGGATTGGCCAGTTTGCATATGCATTAGGAAAAGACTTTCGTTTGCTTTTGATGTCAGCTCTCTATC
CAATACTGGAGAAGGCGGGAGATCCAACCTTGCTTATTAGTCAAGTGGCTACTAGCACCATGGTAGATAT
TTGCCACGCTTGTGGCTACAACTCTGTACAACACCTGATCAATCAAAATTCAGACTATTTGGTGAATGGA
ATCTCTTTAAATCTGCGTCACCTCGCTCTGCACCCTCATGCCCCAAAAGTCCTAGAAGCCATGCTTCGGA
ACGCGGATGCCAGCCTACTTCCTTTGGTAGCAGATGTGGTTCAGGACGTCCTGGCCACCCTGGACCAATT
TTATGATAAGAGAGCTGCTTCCTTTGTCAGCGTTCTGCATGCTCTGCTGGCAGCATTAGCACACTGGTTC
CCAGACTCGGGTTCTACTGGGCAACTCCAACAGCGTAGTTTAGAAGAGGAGGGGAGGCAACTGCCAGCAG
CTGGCGAGGCTAGCACCACAGCCGAGGACATCGAGCAGTTTGTACTGAGCTACCTCCAAGAGAAGGATGT
GGCAGAGGGAAATGTTTCTGACCTTGAAGCTGAAGAAGAGGTGCAGTCAGCCCCTCCCAAAGTGGATGAG
AATGACACCCTTCCAGATGTGGAACCACCACTGCCAACGCACATCCAGATAGCCAAGGACGTGATGGAGC
GCTGCATCCACTTGTCAGCAGATAAAAATCTGAAAATCCGCCTGAAGGTCTTGGATGTGCTGGGTTTGTG
TGTGGAGGTTCTACAGACCCACAAGAACCAGCTCCTTCCCCTAGCTCATCGGGCCTGGCCTTCACTCGTA
CACCGACTTACAAGTGATGACCCCCTGGCAGTGCTCAGAGCCTTCAAGGTTTTACAGACACTTGGAAGCA
GATGTGGCGATTTTCTCCGGAGTCGGTTCTGTAAAGATGTCCTGCCAAAACTGACCAGCTCCTTAATCAC
CCAGGCCCCCATCAGTGCCAGGGCTGGACCAGTTTATTCTCATACACTGGCCTTCAAGCTACAGCTGGCT
GTCTTGCAGGGCCTGGGCCCCCTCTGTGAAAATCTGGACTTGGGTGAGGGTGACCTGAATAAAGTGGCTG
ATGCCTGCGTGATTTACCTCAGTACCAAACAGCCCGTGAAATTACAAGAGGCTGCCAGGAGCGTCTTCCT
CCACCTGATGAGAGTAGACCCTGACTCCACCTGGCTCCTCCTGCATGAGCTGTACTGCCCTGTGCAGCAA
TTCACAGCCCCGCATCCCAGCCTTCACCCAGTGCAGCTGCAGGGGGCCACTCAGCCACAGAACCCCTATG
CCACCAATGTGTGCCACCTGCTTCTTCAACTGCAGTGA

Translation (1085 aa):
MAVFDTPEEAFGVLRPVCVQLTKTQTVENVEHLQTQLQAISDTALQELQQYILFPLRFALKTPGPKRERL
VQSVVECLTFVLSSTCVREQELLQELFSELSACLYSPSSQKPAALSEELKLAVIQGLSTLMHSAYRDIIL
TFYEPSILPRLGFAVSLLLGLAEQEKSKQIKIAALQCLQVLLLQCDCQDHPRPLDELEQQQLGDLLASFL
PGISTALTRIITGDFKQGHSIVVSSLKVFYKTVGFIMADEQLTRIPKAQAKPVVEHRVAALMIHREADWV
KSTGDKLAIFIKKIIDCVSVHPHWKVRLELVEFVEILLLKCTQSLVESTGPLLKVLVGLVNDESPEVQAR
CSTVLRRLADQKVVVGSRALADILSESLHSLATSLPRLMNTQDDQGKFSTLSLLLGYLKLLGPKVHVILN
SVAHVQRLSRALIQVLELEVTDVKMVEERRWNSDNLSASAEVSAARPWSRVQRRYFRCFTDERVFLLLRK
ICQLLGYYGDLYLLVDHFMELYHTSVVYRKQAAMILNELVVGAAGLDVEDIHNKCPSMGPEELREIVKSI
LEEYTSQENWYLITCFEAEEGEEVMMKQQGFQAVTSGVHTCQVVSFPALSKPSPTICSMNSNIWQICIQL
EGIGQFAYALGKDFRLLLMSALYPILEKAGDPTLLISQVATSTMVDICHACGYNSVQHLINQNSDYLVNG
ISLNLRHLALHPHAPKVLEAMLRNADASLLPLVADVVQDVLATLDQFYDKRAASFVSVLHALLAALAHWF
PDSGSTGQLQQRSLEEEGRQLPAAGEASTTAEDIEQFVLSYLQEKDVAEGNVSDLEAEEEVQSAPPKVDE
NDTLPDVEPPLPTHIQIAKDVMERCIHLSADKNLKIRLKVLDVLGLCVEVLQTHKNQLLPLAHRAWPSLV
HRLTSDDPLAVLRAFKVLQTLGSRCGDFLRSRFCKDVLPKLTSSLITQAPISARAGPVYSHTLAFKLQLA
VLQGLGPLCENLDLGEGDLNKVADACVIYLSTKQPVKLQEAARSVFLHLMRVDPDSTWLLLHELYCPVQQ
FTAPHPSLHPVQLQGATQPQNPYATNVCHLLLQLQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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