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Report for CCDS27811.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27811.1 Public Mus musculus 15 Lmbr1l 23 108 98 CCDS HistoryNCBI Gene:74775Re-query CCDS DB by CCDS ID:27811.1See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27811.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023736.9 ENSMUSP00000023736.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023736.9Link to Ensembl Protein Viewer:ENSMUSP00000023736.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000023736Re-query CCDS DB by Protein ID:ENSMUSP00000023736
Original member NCBI NM_029098.3 NP_083374.1 Updated not alive Link to Nucleotide Sequence:NM_029098.3Link to Protein Sequence:NP_083374.1Re-query CCDS DB by Nucleotide ID:NM_029098Re-query CCDS DB by Protein ID:NP_083374
Current member NCBI NM_029098.4 NP_083374.1 Accepted alive Link to Nucleotide Sequence:NM_029098.4Link to Protein Sequence:NP_083374.1Re-query CCDS DB by Nucleotide ID:NM_029098Re-query CCDS DB by Protein ID:NP_083374Link to BLAST:NP_083374.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083374.1 489 Q9D1E5-1 489 100% 0 0

Chromosomal Locations for CCDS 27811.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 98904441 98904508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 98904665 98904826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 98905916 98905982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 98906244 98906334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 98907537 98907610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 98907894 98907971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 98908520 98908596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 98908676 98908759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 98908849 98908921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 98909203 98909267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 98909388 98909456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 98911496 98911622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 98912144 98912247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 98912398 98912537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 98913557 98913590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 98915137 98915221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 98917850 98917921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1470 nt):
ATGGAAGCAGCTGACTACGAAGTGCTATCCGTGCGAGAACAGCTGTTCCACGACAGGGTCCGCGAGTGCA
TCATCTCAATACTTCTGTTTGCAACACTCTACATCCTCTGCCATATCTTCCTGACCCGCTTCAAGAAGCC
TGCTGAGTTCACCACAGTGGATGATGAAGATGCCACAGTTAACAAGATTGCGCTGGAGCTGTGCACCTTT
ACCCTGGCGGTCGCCCTGGGCGCCGTCTTACTCCTGCCCTTCTCCATCATCAGCAACGAGGTGCTGCTCT
CGTTGCCACGCAACTACTACATCCAGTGGCTCAATGGCTCCCTCATCCATGGTCTGTGGAACCTCGTTTT
CCTCTTCTCCAATCTGTCCCTCGTCTTCCTTATGCCCTTTGCATATTTCTTCACAGAGTCTGAAGGCTTT
GCTGGCTCCAGAAAGGGTGTCCTGGGCCGGGTCTACGAGACAGTGGTGATGTTGATCCTCCTCACGCTGC
TTGTGCTGGGCATGGTGTGGGTGGCATCCGCCATTGTAGACAATGACAAGGCCAGCAGGGAGTCGCTCTA
CGACTTCTGGGAGTACTACCTCCCCTATCTCTACTCCTGTATCTCCTTCCTCGGAGTTCTGCTGCTTCTG
GTGTGCACTCCACTAGGTCTCGCCCGCATGTTCTCTGTCACTGGGAAGTTGCTGGTCAAGCCCCGGCTAC
TGGAAGACCTGGAGGAACAGCTGAACTGCTCAGCCTTTGAGGAGGCAGCTCTGACTCGAAGAATCTGCAA
TCCCACCTCCTGCTGGCTGCCACTGGACATGGAACTGCTGCATAGACAGGTCCTGGCTCTGCAGGCACAG
AGGGTCCTCTTGGAAAAGCGTCGGAAGGCGTCAGCCTGGCAACGGAACCTGGGCTACCCTCTGGCCATGC
TGTGCTTGCTGGTGCTGACGGGCCTGTCTGTCCTCATCGTGGCTGTCCACATCCTGGAGCTGCTTATTGA
CGAGGCTGCCATGCCACGGGGCATGCAGGATGCTGCCCTAGGCCAGGCCTCCTTCTCCAAACTGGGATCC
TTTGGCGCCATCATCCAGGTTGTGCTGATATTTTACCTGATGGTGTCCTCAGTGGTGGGTTTCTACAGCT
CTCCACTCTTTGGAAGCCTGAGGCCTAGGTGGCATGACACATCGATGACACAGATCATTGGGAACTGTGT
CTGCCTCCTGGTCCTCAGCTCAGCACTTCCTGTCTTCTCTAGAACTCTTGGCCTGACACGCTTTGACCTG
CTGGGTGACTTTGGACGCTTCAACTGGCTAGGCAATTTCTACATCGTGTTCCTCTACAACGCAGCCTTTG
CTGGCCTCACCACACTCTGTCTGGTGAAGACCTTCACGGCAGCTGTGAGGGCAGAGCTGATCCGAGCCTT
TGGGCTGGACAGACTGCCACTGCCTGTCTCTGGGTTTCCCCGGGCTTCTAGGAAGAAGCAGCATCAATGA

Translation (489 aa):
MEAADYEVLSVREQLFHDRVRECIISILLFATLYILCHIFLTRFKKPAEFTTVDDEDATVNKIALELCTF
TLAVALGAVLLLPFSIISNEVLLSLPRNYYIQWLNGSLIHGLWNLVFLFSNLSLVFLMPFAYFFTESEGF
AGSRKGVLGRVYETVVMLILLTLLVLGMVWVASAIVDNDKASRESLYDFWEYYLPYLYSCISFLGVLLLL
VCTPLGLARMFSVTGKLLVKPRLLEDLEEQLNCSAFEEAALTRRICNPTSCWLPLDMELLHRQVLALQAQ
RVLLEKRRKASAWQRNLGYPLAMLCLLVLTGLSVLIVAVHILELLIDEAAMPRGMQDAALGQASFSKLGS
FGAIIQVVLIFYLMVSSVVGFYSSPLFGSLRPRWHDTSMTQIIGNCVCLLVLSSALPVFSRTLGLTRFDL
LGDFGRFNWLGNFYIVFLYNAAFAGLTTLCLVKTFTAAVRAELIRAFGLDRLPLPVSGFPRASRKKQHQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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