NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS50426.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50426.1 Public Mus musculus 19 Tnks2 23 108 98 CCDS HistoryNCBI Gene:74493Re-query CCDS DB by CCDS ID:50426.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50426.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025729.11 ENSMUSP00000025729.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025729.11Link to Ensembl Protein Viewer:ENSMUSP00000025729.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000025729Re-query CCDS DB by Protein ID:ENSMUSP00000025729
Original member Current member NCBI NM_001163635.1 NP_001157107.1 Accepted alive Link to Nucleotide Sequence:NM_001163635.1Link to Protein Sequence:NP_001157107.1Re-query CCDS DB by Nucleotide ID:NM_001163635Re-query CCDS DB by Protein ID:NP_001157107Link to BLAST:NP_001157107.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001157107.1 1166 Q3UES3 1166 100% 0 0

Chromosomal Locations for CCDS 50426.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 36834538 36834736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 36845534 36845758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 36849289 36849384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 36851500 36851536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 36852478 36852553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 36852802 36852896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 36854891 36854957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 36857803 36857989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 36859055 36859176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 36862086 36862177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 36862287 36862365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 36865952 36866123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 36867640 36867719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 36871613 36871758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 36872423 36872588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 36873797 36874016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 36875264 36875373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 36876185 36876373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 36879235 36879487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 36880510 36880592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 36881677 36881797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 36884066 36884163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 36885483 36885557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 36887066 36887171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 36888709 36888895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 36889892 36890048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 36890741 36890803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3501 nt):
ATGTCTGGCCGCCGCTGCGCCGGCGGGGGCGCGGCCTGCGCGAGCGCCGGGGCCGAGGCCGTGGAGCCGT
CCGCCCGCGAGCTGTTCGAGGCTTGCCGCAACGGGGACGTGGAGCGAGTCAAGAGGCTGGTGACGCCCGA
GAAGGTGAACAGCCGCGACACGGCGGGCAGGAAGTCCACCCCGCTCCACTTCGCCGCAGGTTTTGGACGG
AAGGATGTAGTTGAATATCTTCTTCAGAACGGTGCAAATGTGCAAGCGCGTGATGATGGGGGTCTTATTC
CTCTTCATAACGCATGCTCTTTTGGTCATGCTGAAGTAGTCAATCTTCTTTTACAACACGGTGCAGACCC
AAATGCTCGGGATAATTGGAATTATACTCCTCTCCATGAAGCTGCAATTAAAGGAAAAATTGATGTTTGC
ATTGTGCTTTTACAGCATGGAGCTGAGCCAACCATCCGAAATACAGATGGAAGGACAGCATTGGATTTAG
CAGACCCATCTGCCAAAGCTGTTCTGACTGGTGACTATAAGAAAGATGAACTTCTGGAAAGTGCCAGGAG
TGGCAATGAGGAAAAAATGATGGCCCTGCTTACACCATTGAATGTCAACTGCCATGCAAGTGATGGCAGA
AAGTCAACTCCATTGCATTTGGCAGCAGGATACAACAGAGTAAAAATTGTACAACTGTTACTGCACCATG
GGGCTGATGTCCATGCTAAAGATAAAGGGGATCTGGTACCACTACACAATGCCTGCTCTTACGGTCATTA
TGAAGTAACTGAACTTCTGGTCAAGCACGGTGCCTGTGTGAATGCAATGGACCTGTGGCAGTTCACTCCT
CTTCATGAGGCAGCTTCTAAGAACAGGATTGAAGTATGTTCTCTCCTCCTAAGTTACGGGGCAGATCCAA
CCCTGCTGAACTGTCACAATAAAAGTGCTATAGACCTGGCCCCCACGGCACAGCTGAAGGAAAGATTATC
GTATGAATTTAAAGGCCATTCATTGCTGCAAGCTGCACGAGAAGCTGATGTTACAAGAATCAAAAAACAT
CTTTCTCTGGAAATGGTGAATTTCAAACATCCTCAGACACATGAAACAGCACTGCATTGTGCTGCTGCAT
CTCCATATCCCAAAAGAAAGCAGATATGTGAACTGCTGCTCAGAAAGGGAGCAAACACCAACGAAAAGAC
TAAAGAATTCTTGACTCCTCTGCACGTGGCTTCTGAGAACGCTCACAATGATGTTGTTGAAGTAGTGGTG
AAACATGAAGCAAAGGTTAATGCTTTGGATAGTCTTGGACAGACGTCATTACACAGAGCTGCACACTGTG
GTCACCTGCAGACCTGCCGCCTGCTCCTGAGCTATGGGTGTGATCCAAACATCATATCCCTTCAGGGTTT
CACCGCCTTGCAAATGGGAAATGAAAATGTGCAGCAGCTGCTCCAAGAGGGCGCCTCACTAGGTCACTCA
GAGGCGGACAGACAGCTGCTGGAAGCTGCAAAGGCTGGTGACGTTGAAACTGTAAAAAAACTCTGTACTG
TTCAGAGTGTCAACTGCAGAGACATTGAAGGACGCCAGTCAACCCCACTCCACTTTGCAGCTGGGTACAA
CAGAGTGTCTGTGGTAGAATATCTGCTGCAACATGGAGCTGATGTTCATGCTAAAGACAAAGGAGGTCTT
GTACCTTTACACAATGCATGTTCTTATGGACACTATGAAGTTGCAGAACTTCTTGTCAAGCATGGAGCAG
TAGTCAATGTCGCTGACTTGTGGAAGTTCACACCTTTACATGAAGCTGCAGCAAAAGGAAAATATGAAAT
ATGCAAACTTCTACTCCAGCATGGTGCAGACCCTACAAAGAAAAACAGAGATGGTAATACTCCTCTGGAT
CTTGTTAAAGATGGAGATACAGATATTCAAGATCTACTTAGAGGTGATGCAGCTTTGCTGGATGCTGCCA
AGAAGGGTTGTTTAGCCAGAGTGAAGAAATTGTCTTCTCCTGATAATGTAAATTGCCGTGATACCCAAGG
TCGGCATTCTACACCTTTACATTTGGCAGCTGGTTATAATAACTTGGAAGTTGCTGAGTATTTATTGCAA
CATGGAGCTGATGTGAATGCCCAGGACAAAGGAGGACTCATTCCTTTACATAACGCAGCATCGTATGGAC
ATGTAGATGTAGCAGCTTTGCTGATAAAGTACAATGCGTGTGTCAATGCCACGGACAAATGGGCTTTCAC
ACCGTTACATGAAGCAGCCCAAAAGGGACGGACACAGCTTTGTGCTTTATTGTTGGCCCATGGAGCTGAT
CCTACTCTTAAAAATCAAGAAGGACAAACACCTTTAGATTTAGTTTCAGCAGATGATGTCAGTGCACTCT
TGACAGCAGCCATGCCCCCCTCTGCTCTGCCTACGTGCTACAAACCTCAAGTGCTCAGTGGCGTGAGGGG
CCCCGGAGCCACTGCAGATGCTCTGTCTTCAGGTCCGTCCAGCCCATCCAGCCTCTCTGCAGCCAGCAGC
CTCGACAACTTATCTGGCAGCTTCTCGGAACTGTCCGCAGTGGTTAGTTCAAGTGCAGCAGAAGGTGCTA
CTGGTTTGCAAAGAAAAGAGGATTCAGGAATCGATTTTAGTATAACTCAGTTCATAAGGAACCTTGGACT
TGAGCACTTGATGGATATATTTGAGAGAGAACAGATTACCTTAGATGTCCTAGTTGAAATGGGCCACAAG
GAACTGAAAGAGATTGGAATCAATGCCTATGGACATCGACACAAGCTGATTAAAGGAGTTGAAAGGCTGA
TCTCTGGACAACAAGGTCTTAATCCATATTTAACTCTAAACAACTCTGGTAGTGGAACAATTCTCATAGA
TCTGTCTCCTGATGATAAAGAATTTCAGTCTGTGGAAGAAGAGATGCAGAGTACTGTGCGGGAGCACAGA
GATGGTGGTCACGCAGGCGGCGTCTTCAACAGATACAACATTCTCAAGATTCAGAAGGTTTGTAACAAGA
AATTGTGGGAAAGATATACACACCGGAGAAAAGAAGTTTCTGAAGAAAACCACAACCATGCAAACGAAAG
GATGTTATTTCATGGGTCTCCTTTTGTGAATGCGATTATCCATAAGGGCTTTGATGAAAGGCATGCATAC
ATAGGTGGCATGTTTGGAGCTGGAATTTATTTTGCTGAGAACTCTTCCAAAAGCAATCAATATGTGTATG
GAATTGGAGGTGGCACCGGATGTCCAATTCACAAAGACAGATCGTGTTACATTTGTCACAGGCAGCTGCT
GTTTTGTCGAGTAACCTTGGGAAAGTCTTTCTTGCAGTTCAGCGCAATGAAAATGGCACATTCTCCTCCC
GGCCATCACTCGGTCACTGGCCGGCCCAGTGTAAATGGCCTAGCATTAGCTGAATATGTTATTTACAGAG
GAGAACAGGCTTATCCTGAATATCTAATTACTTACCAGATTGTAAGGCCTGAAGGTATGGTTGATGGCTG
A

Translation (1166 aa):
MSGRRCAGGGAACASAGAEAVEPSARELFEACRNGDVERVKRLVTPEKVNSRDTAGRKSTPLHFAAGFGR
KDVVEYLLQNGANVQARDDGGLIPLHNACSFGHAEVVNLLLQHGADPNARDNWNYTPLHEAAIKGKIDVC
IVLLQHGAEPTIRNTDGRTALDLADPSAKAVLTGDYKKDELLESARSGNEEKMMALLTPLNVNCHASDGR
KSTPLHLAAGYNRVKIVQLLLHHGADVHAKDKGDLVPLHNACSYGHYEVTELLVKHGACVNAMDLWQFTP
LHEAASKNRIEVCSLLLSYGADPTLLNCHNKSAIDLAPTAQLKERLSYEFKGHSLLQAAREADVTRIKKH
LSLEMVNFKHPQTHETALHCAAASPYPKRKQICELLLRKGANTNEKTKEFLTPLHVASENAHNDVVEVVV
KHEAKVNALDSLGQTSLHRAAHCGHLQTCRLLLSYGCDPNIISLQGFTALQMGNENVQQLLQEGASLGHS
EADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGL
VPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLD
LVKDGDTDIQDLLRGDAALLDAAKKGCLARVKKLSSPDNVNCRDTQGRHSTPLHLAAGYNNLEVAEYLLQ
HGADVNAQDKGGLIPLHNAASYGHVDVAALLIKYNACVNATDKWAFTPLHEAAQKGRTQLCALLLAHGAD
PTLKNQEGQTPLDLVSADDVSALLTAAMPPSALPTCYKPQVLSGVRGPGATADALSSGPSSPSSLSAASS
LDNLSGSFSELSAVVSSSAAEGATGLQRKEDSGIDFSITQFIRNLGLEHLMDIFEREQITLDVLVEMGHK
ELKEIGINAYGHRHKLIKGVERLISGQQGLNPYLTLNNSGSGTILIDLSPDDKEFQSVEEEMQSTVREHR
DGGHAGGVFNRYNILKIQKVCNKKLWERYTHRRKEVSEENHNHANERMLFHGSPFVNAIIHKGFDERHAY
IGGMFGAGIYFAENSSKSNQYVYGIGGGTGCPIHKDRSCYICHRQLLFCRVTLGKSFLQFSAMKMAHSPP
GHHSVTGRPSVNGLALAEYVIYRGEQAYPEYLITYQIVRPEGMVDG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH