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Report for CCDS48744.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48744.1 Public Mus musculus 11 Mtmr3 23 108 98 CCDS HistoryNCBI Gene:74302Re-query CCDS DB by CCDS ID:48744.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48744.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000040448.12 ENSMUSP00000049079.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000040448.12Link to Ensembl Protein Viewer:ENSMUSP00000049079.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000040448Re-query CCDS DB by Protein ID:ENSMUSP00000049079
Original member Current member EBI ENSMUST00000109943.9 ENSMUSP00000105569.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109943.9Link to Ensembl Protein Viewer:ENSMUSP00000105569.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000109943Re-query CCDS DB by Protein ID:ENSMUSP00000105569
Original member Current member NCBI NM_028860.2 NP_083136.2 Accepted alive Link to Nucleotide Sequence:NM_028860.2Link to Protein Sequence:NP_083136.2Re-query CCDS DB by Nucleotide ID:NM_028860Re-query CCDS DB by Protein ID:NP_083136Link to BLAST:NP_083136.2

Chromosomal Locations for CCDS 48744.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 4482768 4482939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4485363 4485451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4487234 4488632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4489622 4489767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4490978 4491148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4491807 4491992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4492719 4492914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4497338 4497449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4497931 4498062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4498888 4499093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4504032 4504145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4507590 4507686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4517741 4517907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4520832 4520914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4527836 4527952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4528317 4528406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4531222 4531224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3480 nt):
ATGGATGAAGAGATGCGGCATAGCCTTGAGTGCATCCAGGCCAATCAGATCTTTCCCAGGAAGCAGCTGA
TTCGGGAGGATGAGAATCTTCAGGTTCCTTTCCTTGAACTTCATGGAGAGAGCACAGAGTATGTGGGCCG
TGCTGAGGAGGCCATCATTGCTCTTTCTAATTACAGGCTTCACATCAAGTTCAAGGAGTCTCTTGTCAAT
GTTCCATTACAGCTTATTGAAAGCGTTGAATGCCGTGATATATTTCAGCTTCATTTGACATGCAAAGACT
GCAAAGTTATCAGGTGTCAGTTCCCAACCTTTGAGCAATGTCAAGATTGGCTTAAGAGATTGAACAATGC
AATCCGACCACCTGGTAAAATAGAAGATCTCTTCTCATTTGCATACCATGCTTGGTGCATGGAGGTCTAC
GCCAGTGAAAAGGAGCAGCATGGAGACCTGTGCAGACCAGGGGAACATGTGACGTCAAGGTTTAAGAATG
AAGTGGAGCGGATGGGTTTTGATATGAACAATGCCTGGAGGATTTCCAACATCAATGAGAAATACAAATT
ATGTGGTAGTTATCCACAAGAGCTCATAGTGCCTGCTTGGATCACTGACAAAGAGCTGGAAAGCGTGGCA
GGCTTCAGATCCTGGAAGCGCATCCCTGCTGTCATCTACAGGCACCAGAGCAATGGAGCTGTCATTGCCC
GCTGCGGACAACCGGAGGTTAGCTGGTGGGGCTGGCGAAATGCTGATGATGAACATCTGGTGCAGTCAGT
GGCCAGAGCCTGTGCTTCTGACTCTCAGTCAAGTATCAGCAAGGTTTCCACTCGGAACAGTTGTCGGGAC
TTTCCCAACGCAGGGGATCTTTCAGATGTGGAGTTCGATTCCTCTCTGTCAAATACTTCAGGAGCAGAAA
GTTTAGCTCTCCAGCCCCAGAAGCTTTTGATCTTGGATGCACGCTCCTATGCAGCAGCTGTGGCAAATCG
AGCCAAAGGAGGAGGCTGTGAGTGCCCAGAGTATTATCCTAACTGTGAAGTTGTGTTTATGGGAATGGCA
AACATACATTCTATCCGGAGGAGTTTCCAGTCTCTGCGGCTGCTGTGCACACAGATGCCAGATCCTGGAA
ATTGGCTTTCTGCCCTTGAAAGTACAAAGTGGCTCCATCACCTATCTGTGCTTCTGAAGTCGGCACTTCT
CGTGGTGCATGCTGTGGACCGTGATCAGCGACCAGTGCTAGTGCACTGCTCCGATGGCTGGGATCGGACT
CCCCAGATTGTGGCCCTAGCTAAGCTCCTACTTGACCCTTATTACCGAACCATAGAGGGTTTCCAAGTCC
TGGTGGAGATGGAATGGCTCGATTTTGGCCATAAGTTTGCTGACCGGTGTGGTCATGGGGAGGACTCAGA
TGATCTGAATGAGCGCTGCCCAGTGTTTCTACAATGGCTTGACTGTGTTCATCAACTTCAGAGGCAGTTT
CCTTGCTCTTTTGAGTTCAACGAAGCATTCCTTGTGAAACTGGTACAGCATACCTATTCCTGTCTCTTTG
GAACATTCCTGTGCAACAACGCCAAAGAGAGAGGGGAAAAGCAGACTCAGGAACGGACATGCTCTGTGTG
GTCACTTCTTCGAGCAGGCAACAAGGCTTTCAAAAACCTACTGTATTCATCTCAGTCAGAAGCCGTGCTC
TACCCCGTGTGCCATGTGCGGAATCTGATGCTGTGGAGCGCAGTGTACCTTCCCTGCCCATCCCCATCTA
CCCCCACAGATGACAGCTGTGCACCATACCCAGTCCCAGGCACTAGCCCTGATGAGCCCCCACTGAGCCG
GCTACCCAAGACTAGATCATTTGACAATCTGACCACAACCTGCGAAAACATGGTGCCGCTGGCCAGCCGG
CGCAGCAGTGACCCCAGCCTGAATGAGAAGTGGCAGGAGCACGGGCGCTCGCTGGAGCTGAGCAGCTTTG
CCAGCGCTGGGGAAGAGGTGCCTGCTATGGACAGCCTGCGCAAGCCCAGCAGGCTGCTCGGAGGTGCTGA
GCTTTCTGTGGCAGCCGGAGTGGCTGAAGGGCAGATGGAGAACATTTTGCAAGAGGCCACCAAAGAGGAG
AGTGGGGTAGAAGAGCCTACCCACAGGGGGCACACTGAGGTGCCAGAGGTCAAAGAGGAGGCACCCCTAG
CAAAAGAAAGTAGCATGGCGGCCGAGGGCCCCGTTGTACTTTACCAAGAACCACAGCTGGATGACGCTAC
TTTAAGAAGCCATCAAGGCCCCAGCCTCTCTTTGTTCTCCCAGGGTATTCCTGAACATCAGGATGGGCAC
AATGTCCTCTCTAGTTCACTCCAAGCTCCTCTCAGGGGAGAGGACTCCCAGGAGGTCCCTGTAGAACAGC
CTCAAGTAGAGAATATTGCAGAGGACAGGGAGAATGTAGCTCCTGCTGTCCCAGTAGATGCAAAAGTTGG
CCTTGGTATCTCACAGTCTAGTTCTCTGCTGCCTTCCCAAGTCCCATTCGAGACAAGAGGACCACACATC
AACAACTCCGTGCACATGTTACTCGAAGATAAGGTAAAGTCAGAAAGTGGGCCCCAGCTCCATCACAGAC
CTTGCCCAGCAAGCAGTGGTAGATTCAGTGGCAAGGACATGCTTCCTGTAGCACCAGAGCCCAGGTCTGC
TGAGAGGCCCCAGTGGGACTCTGTGCTACACAGGACTTCATCCCCTGGCAACACCCTTAGCCTGCTGCAG
GCTCCTTGTGCCTTGCCGTTAGATAAATGTAGACAGGGAATTGTGTGCAACGGTGCCCTAGAGACTGAAA
ACAAGGCCTCAGAACAGCCTGCAGGGTTTGACACCCTTCAGAAGTACCCCACACCCAATGGGCATTGTGC
CAATTGGGAGGCTGGGAGGAGCAAGGACTCACTGAGCCACCAGCTGTCTGCCACAAGCTGTAGCTCTGCT
CACTTGTACTCGAGGAACTTGCACCACAAGTGGCTGAATAGCCACTCAGGGAGGCCATCCACTACCAGCA
GCCCTGACCAGCCTTCCCGCAGCCACCTGGATGACGATGGCATGCCTGTGTACACGGACACAATCCAACA
GCGCCTGCGACAGATAGAGTCTGGTCACCAGCAGGAAGTGGAGACCTTGAAGAAACAAGTCCAGGAGTTG
AAGAGTCGCCTGGAGAGCCAGTACCTGACCAGCTCTCTGCGCTTCAATGGAGACTTTGGAGATGAAGTGA
TGACTCGTTGGCTACCTGACCACCTGGCTGCCCACTGCTATGCCTGTGACAGTGCCTTCTGGCTCGCCAG
TAGGAAGCACCACTGCAGGAATTGTGGGAATGTATTCTGCTCCAGTTGTTGTAACCAGAAGGTTCCGGTT
CCTAGCCAGCAGCTCTTTGAACCCAGTCGAGTGTGCAAGTCTTGCTATAGCAGCCTCCATCCTACAAGCT
CCAGCATTGACCTTGAACTGGATAAGCCTATTGCTGCCACTTCAAACTGA

Translation (1159 aa):
MDEEMRHSLECIQANQIFPRKQLIREDENLQVPFLELHGESTEYVGRAEEAIIALSNYRLHIKFKESLVN
VPLQLIESVECRDIFQLHLTCKDCKVIRCQFPTFEQCQDWLKRLNNAIRPPGKIEDLFSFAYHAWCMEVY
ASEKEQHGDLCRPGEHVTSRFKNEVERMGFDMNNAWRISNINEKYKLCGSYPQELIVPAWITDKELESVA
GFRSWKRIPAVIYRHQSNGAVIARCGQPEVSWWGWRNADDEHLVQSVARACASDSQSSISKVSTRNSCRD
FPNAGDLSDVEFDSSLSNTSGAESLALQPQKLLILDARSYAAAVANRAKGGGCECPEYYPNCEVVFMGMA
NIHSIRRSFQSLRLLCTQMPDPGNWLSALESTKWLHHLSVLLKSALLVVHAVDRDQRPVLVHCSDGWDRT
PQIVALAKLLLDPYYRTIEGFQVLVEMEWLDFGHKFADRCGHGEDSDDLNERCPVFLQWLDCVHQLQRQF
PCSFEFNEAFLVKLVQHTYSCLFGTFLCNNAKERGEKQTQERTCSVWSLLRAGNKAFKNLLYSSQSEAVL
YPVCHVRNLMLWSAVYLPCPSPSTPTDDSCAPYPVPGTSPDEPPLSRLPKTRSFDNLTTTCENMVPLASR
RSSDPSLNEKWQEHGRSLELSSFASAGEEVPAMDSLRKPSRLLGGAELSVAAGVAEGQMENILQEATKEE
SGVEEPTHRGHTEVPEVKEEAPLAKESSMAAEGPVVLYQEPQLDDATLRSHQGPSLSLFSQGIPEHQDGH
NVLSSSLQAPLRGEDSQEVPVEQPQVENIAEDRENVAPAVPVDAKVGLGISQSSSLLPSQVPFETRGPHI
NNSVHMLLEDKVKSESGPQLHHRPCPASSGRFSGKDMLPVAPEPRSAERPQWDSVLHRTSSPGNTLSLLQ
APCALPLDKCRQGIVCNGALETENKASEQPAGFDTLQKYPTPNGHCANWEAGRSKDSLSHQLSATSCSSA
HLYSRNLHHKWLNSHSGRPSTTSSPDQPSRSHLDDDGMPVYTDTIQQRLRQIESGHQQEVETLKKQVQEL
KSRLESQYLTSSLRFNGDFGDEVMTRWLPDHLAAHCYACDSAFWLASRKHHCRNCGNVFCSSCCNQKVPV
PSQQLFEPSRVCKSCYSSLHPTSSSIDLELDKPIAATSN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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