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Report for CCDS36465.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36465.1 Public Mus musculus 12 Atl1 23 108 98 CCDS HistoryNCBI Gene:73991Re-query CCDS DB by CCDS ID:36465.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36465.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021466.9 ENSMUSP00000021466.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021466.9Link to Ensembl Protein Viewer:ENSMUSP00000021466.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000021466Re-query CCDS DB by Protein ID:ENSMUSP00000021466
Original member Current member NCBI NM_178628.5 NP_848743.1 Accepted alive Link to Nucleotide Sequence:NM_178628.5Link to Protein Sequence:NP_848743.1Re-query CCDS DB by Nucleotide ID:NM_178628Re-query CCDS DB by Protein ID:NP_848743Link to BLAST:NP_848743.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848743.1 558 Q8BH66 558 100% 0 0

Chromosomal Locations for CCDS 36465.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 69907959 69907992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 69925942 69926189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 69931538 69931672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 69932217 69932321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 69934870 69934920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 69937075 69937131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 69946213 69946305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 69947447 69947585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 69953440 69953567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 69954456 69954512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 69955316 69955387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 69959041 69959472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 69960548 69960562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 69963228 69963338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1677 nt):
ATGGCTAAGAGCCGCAGGGACAGAAACAGTTGGGGTGGGTTTTCAGAGAAGTCAAGTGACTGGAGCTCAG
AAGAGGAGGAGCCAGTGAGAAAGGCAGGGCCTGTCCAGGTCCTCATCGTCAAGGACGACCATTCCTTTGA
GTTAGACGAGGCTGCGCTGAACCGCATCCTTCTGTCCCAGGCCGTCAGAGACAAGGAGGTGGTTGCTGTG
TCTGTTGCTGGAGCCTTTAGAAAAGGGAAATCCTTCCTGATGGACTTCATGTTGCGGTACATGTACAACC
AGGAATCTGTTGATTGGGTTGGAGATTACAATGAACCATTGACTGGATTTTCATGGAGGGGTGGATCGGA
ACGAGAAACCACAGGAATCCAGATATGGAGTGAAGTTTTCCTCATCAATAAGCTTGATGGTAAAAAGGTT
GCAGTGTTACTGATGGATACTCAGGGAACCTTTGACAGTCAGTCAACTTTGAGAGATTCGGCCACAGTAT
TTGCGCTTAGCACAATGATAAGCTCAATACAGGTCTACAACTTGTCCCAGAATGTCCAGGAGGATGATCT
CCAGCACCTGCAGCTTTTCACTGAGTATGGCAGGTTGGCAATGGAAGAAACATTCCTGAAGCCTTTTCAG
AGTCTGATATTTCTTGTTCGAGACTGGAGTTTCCCATACGAATTTTCATATGGAGCTGATGGTGGCGCCA
AGTTCTTGGAAAAACGCCTCAAGGTCTCAGGGAACCAGCATGAAGAGCTGCAGAACGTCAGGAAGCACAT
CCACTCCTGCTTCACCAACATTTCCTGCTTTCTCCTACCTCATCCTGGCTTAAAAGTCGCTACCAACCCA
AACTTTGATGGGAAACTAAAAGAAATAGATGATGAATTCATCAAAAACTTGAAAATACTGATTCCATGGC
TCCTGAGTCCTGAGCGTCTAGATATTAAAGAGATCAATGGGAATAAAATCACCTGCCGAGGCCTGCTGGA
GTACTTCAAGGCATACATAAAGATATACCAAGGTGAAGAATTGCCGCATCCCAAGTCCATGTTACAGGCC
ACAGCAGAAGCTAACAATTTAGCAGCTGTTGCAACTGCCAAGGACACATACAACAAGAAGATGGAAGAGG
TTTGTGGTGGTGATAAACCATTTTTGGCCCCTAACGACCTGCAAAGCAAGCACCTGCAGCTAAAAGAAGA
ATCTGTGAAGTTATTCCGAGGCGTGAAGAAGATGGGCGGGGAAGAGTTCAGCCGGCGTTACCTGCAGCAG
CTGGAGAGTGAAATAGATGAACTCTACATCCAGTATATTAAGCACAATGACAGCAAAAATATCTTCCATG
CTGCTCGAACCCCAGCCACACTGTTCGTTGTCATCTTTATCACATACGTGATTGCTGGTGTGACTGGATT
CATTGGTTTGGACATCATAGCTAGCCTGTGCAACATGATCATGGGACTGACGCTTATCACCCTCTGCACC
TGGGCATATATCCGCTACTCTGGCGAATATCGAGAGCTGGGTGCTGTAATCGACCAGGTAGCTGCAGCTT
TGTGGGACCAGGGAAGCACAAATGAGGCGTTATACAAGCTTTACAGTGCAGCAGCAACCCACAGACACCT
GTGTCACCAAGCTTTCCCTGCACCCAAGTCAGAGCCTACTCAACAACCGGAAAAGAAGAAAATTTAA

Translation (558 aa):
MAKSRRDRNSWGGFSEKSSDWSSEEEEPVRKAGPVQVLIVKDDHSFELDEAALNRILLSQAVRDKEVVAV
SVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEVFLINKLDGKKV
AVLLMDTQGTFDSQSTLRDSATVFALSTMISSIQVYNLSQNVQEDDLQHLQLFTEYGRLAMEETFLKPFQ
SLIFLVRDWSFPYEFSYGADGGAKFLEKRLKVSGNQHEELQNVRKHIHSCFTNISCFLLPHPGLKVATNP
NFDGKLKEIDDEFIKNLKILIPWLLSPERLDIKEINGNKITCRGLLEYFKAYIKIYQGEELPHPKSMLQA
TAEANNLAAVATAKDTYNKKMEEVCGGDKPFLAPNDLQSKHLQLKEESVKLFRGVKKMGGEEFSRRYLQQ
LESEIDELYIQYIKHNDSKNIFHAARTPATLFVVIFITYVIAGVTGFIGLDIIASLCNMIMGLTLITLCT
WAYIRYSGEYRELGAVIDQVAAALWDQGSTNEALYKLYSAAATHRHLCHQAFPAPKSEPTQQPEKKKI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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