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Report for CCDS40606.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40606.1 Public Mus musculus 9 Scn2b 23 108 98 CCDS HistoryNCBI Gene:72821Re-query CCDS DB by CCDS ID:40606.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40606.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000093855.3 ENSMUSP00000091377.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000093855.3Link to Ensembl Protein Viewer:ENSMUSP00000091377.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000093855Re-query CCDS DB by Protein ID:ENSMUSP00000091377
Original member Current member EBI ENSMUST00000170998.8 ENSMUSP00000126826.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000170998.8Link to Ensembl Protein Viewer:ENSMUSP00000126826.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000170998Re-query CCDS DB by Protein ID:ENSMUSP00000126826
Original member Current member NCBI NM_001014761.2 NP_001014761.1 Accepted alive Link to Nucleotide Sequence:NM_001014761.2Link to Protein Sequence:NP_001014761.1Re-query CCDS DB by Nucleotide ID:NM_001014761Re-query CCDS DB by Protein ID:NP_001014761Link to BLAST:NP_001014761.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001014761.1 215 Q56A07 215 100% 0 0

Chromosomal Locations for CCDS 40606.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 45118024 45118093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 45124942 45125108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 45125433 45125643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 45126105 45126304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (648 nt):
ATGCACAGGGATGCCTGGCTACCTCGCCCTGCCTTCAGTCTCACGGGGCTCAGTCTGTTTTTCTCTTTGG
TGCCCCCGGGGCGGAGCATGGAAGTCACAGCGCCCACCACTCTTAGTGTCCTCAATGGGTCCGATACCCG
CCTGCCCTGTACCTTCAACTCCTGCTACACCGTGAACCACAAGCAGTTCTCTCTTAACTGGACTTACCAG
GAGTGTAACAATTGCACAGAGGAGATGTTCCTCCAGTTCCGAATGAAGATCATTAACCTGAAGCTGGAGC
GGTTTGGAGACCGCGTGGAGTTCTCAGGGAACCCCAGTAAGTACGACGTGTCAGTGACTCTAAAGAACGT
GCAGCTAGAAGACGAAGGCATTTACAACTGCTACATTACCAACCCTCCAGACCGCCACCGCGGCCACGGC
AAGATTTACCTGCAGGTCCTTCTAGAAGTACCCCCAGAGCGGGACTCCACGGTGGCGGTCATCGTGGGTG
CCTCAGTGGGGGGTTTCCTGGCTGTGGTCATCTTGGTGCTGATGGTGGTCAAATGTGTGAGGAGGAAAAA
AGAGCAGAAGCTGAGCACGGATGACCTGAAGACTGAAGAGGAAGGCAAGATGGATGGTGAGGGCAACGCG
GAAGATGGCACCAAGTAA

Translation (215 aa):
MHRDAWLPRPAFSLTGLSLFFSLVPPGRSMEVTAPTTLSVLNGSDTRLPCTFNSCYTVNHKQFSLNWTYQ
ECNNCTEEMFLQFRMKIINLKLERFGDRVEFSGNPSKYDVSVTLKNVQLEDEGIYNCYITNPPDRHRGHG
KIYLQVLLEVPPERDSTVAVIVGASVGGFLAVVILVLMVVKCVRRKKEQKLSTDDLKTEEEGKMDGEGNA
EDGTK


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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