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Report for CCDS23167.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23167.1 Public Mus musculus 9 Pih1d2 23 108 98 CCDS HistoryNCBI Gene:72614Re-query CCDS DB by CCDS ID:23167.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23167.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000000171.14 ENSMUSP00000000171.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000000171.14Link to Ensembl Protein Viewer:ENSMUSP00000000171.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000000171Re-query CCDS DB by Protein ID:ENSMUSP00000000171
Original member Current member NCBI NM_028300.2 NP_082576.1 Accepted alive Link to Nucleotide Sequence:NM_028300.2Link to Protein Sequence:NP_082576.1Re-query CCDS DB by Nucleotide ID:NM_028300Re-query CCDS DB by Protein ID:NP_082576Link to BLAST:NP_082576.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082576.1 315 Q8CHR9-1 315 100% 0 0

Chromosomal Locations for CCDS 23167.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 50618473 50618649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 50619755 50619878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 50620945 50621190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 50621621 50621886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 50624860 50624994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (948 nt):
ATGACGGTGTCCTCAAAGGGTCTTCTTACCCACATTTCCCAGTTCTGGAATATGCTCGATGATTTGGCTG
AAAATGACCCCGAGCGCTACCGGAACTTCATTCAGCAGGAGTTGAAAGATGGCAAACAGCTCTGTGTCAA
CCCAGAACCTCAACTCTGCATACAGACCAAGATCCTAAAACCAAACGAAAAAGTACTTTTTATCAACCTA
TGTCAATGGGAAAGGATTCCCGCTCCGCAGTCAGCCACTCGTCCTGTGCCTGTAAGTGTTGGCAGACCAG
AAGACTCCGCTGAGGCATCAGATGCTTATACCATCATTGATGTTGCCTACAATCCTGGTGTTCTGCAAGC
GGCAGAAAAAGACCAAGGGATCAAAGATCAGTTAATAAGAATGGCCATGCTGTGCATCGAGGAGCGACTC
CAGTTCACACTTGCACATTCCTACCATTTAACTAGTTTTAGACTGAAAGGAAGCATCCAGAGAATGAAAG
AAAGTCTGATGGGCATTAAAACTGACTTCCCAGACCTAAAAGCGATGACGAGAACAGAAAATACTCTTGC
GAGGATCAGAAGCAGCACTGTGAGTGAACCTAATCACCTTCCTGAGGTGCTATTGACAAAAAAGCAAGCG
TCGGCCAAAGGACGATGTCTTATAGAAGAGATTTCTAGTTCGGAAATCCAGGTGGAGGTTAAGAAACCTG
CGTACGAATTAAAGGTTGTAAAGGATCGGAACGAGAAACCTCTGAAAATTGAGCTGAAAGTCGAGTTACC
CGGGATTAAGTCAGTCTCTCTCTGTGAACTTAGTGTTTCTGAGGTTGATATATTGATTGAGGTCTCTGAG
ATGTACCGATTATGCCTGAATCTTCCAGAATCGATTAATACAGAAATGACTACAGCAAAATTTGTCAAAA
ATAAATCTGCATTAATCATTACAATGCCCCTGGCATAA

Translation (315 aa):
MTVSSKGLLTHISQFWNMLDDLAENDPERYRNFIQQELKDGKQLCVNPEPQLCIQTKILKPNEKVLFINL
CQWERIPAPQSATRPVPVSVGRPEDSAEASDAYTIIDVAYNPGVLQAAEKDQGIKDQLIRMAMLCIEERL
QFTLAHSYHLTSFRLKGSIQRMKESLMGIKTDFPDLKAMTRTENTLARIRSSTVSEPNHLPEVLLTKKQA
SAKGRCLIEEISSSEIQVEVKKPAYELKVVKDRNEKPLKIELKVELPGIKSVSLCELSVSEVDILIEVSE
MYRLCLNLPESINTEMTTAKFVKNKSALIITMPLA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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