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Report for CCDS52177.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52177.1 Public Mus musculus 7 Zfp566 23 108 98 CCDS HistoryNCBI Gene:72556Re-query CCDS DB by CCDS ID:52177.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52177.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000088785.5 ENSMUSP00000086164.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000088785.5Link to Ensembl Protein Viewer:ENSMUSP00000086164.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000088785Re-query CCDS DB by Protein ID:ENSMUSP00000086164
Original member Current member NCBI NM_152814.2 NP_690027.1 Accepted alive Link to Nucleotide Sequence:NM_152814.2Link to Protein Sequence:NP_690027.1Re-query CCDS DB by Nucleotide ID:NM_152814Re-query CCDS DB by Protein ID:NP_690027Link to BLAST:NP_690027.1

Chromosomal Locations for CCDS 52177.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 30077594 30078618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30081091 30081217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30087100 30087108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1161 nt):
ATGGCTCAGGTGTCAGTGCTGTTCCACGATGTGTACATAGACTTCTCTCAGGAGGAGTGGGAGTGCCTGA
CTGAGGAGCAGAGAGATCTGTACAGAGATGTGATGTTGGAGAATTACAGCAACCTGCTCTCAATGGTCCT
GGAGTCAAGATGTGAGGCCCAGAAGTTATTCCTGAAGAAGGAGCTGTATGAGATAGAGACAGCGCAGTGG
GAGATAATGAGGAAGCTCACGAGACAGGACCTTCAGTGCTCCAGTCTCAGCAGTGCCCGGGAATGGCATG
GCCACCGTGAGAGACAGCGCGGATCTCAGGAGAGACAGTTCAGCGAACTGATCATCAACCGTGACGACGT
GCCCACTCTCAGTCAGTGCCCATCCTTCAGGCTGCAGCAGATTATCAAGAATAAAGAGAAATATTGTGCA
AGTAAAGAAAACAGGGAACACTATAAGCATGGCTCCCGGTTTGCTACCCATCAGATCGTTCGCACCACTG
AGAAGCCGTATGAGTGTAAGGACTGTGGCAAGACCTTTAGACACCCCTCAGGGCTCACTCACCATCACAA
AATTCACACCGGAAAGAAACCCTTTGAGTGTAAGGAATGTGGGAAAACATTCATTTGTGGCTCAGACCTG
ACACGGCATCACAGAATTCACACAGGTGAGAAGCCCTATGAGTGTAAGGACTGCGGAAAAGCCTTCAGTA
GTGGCTCAAATTTTACTCGCCATCAGAGAATTCACACTGGCGAGAAGCCTTATGAATGTAAAGAATGTGG
GAAGGCTTTTAGTAGCGGTTCAAATTTCACTCAACACCAGAGAATTCACACCGGAGAGAAACCCTACGAA
TGTAAGGAATGCGGCAATGCCTTTAGTCAGAGTTCCCAACTTATTAAACATCAAAGAATCCACACCGGTG
AGAAGCCCTATGAGTGTAAGGAGTGTGAGAAGGCTTTCCGGTCGGGTTCTGACCTCACCAGACACCAGAG
AATCCACACCGGAGAGAAGCCGTATGAATGTAAGATTTGTGGGAAAGCCTATTCTCAGAGTTCACAACTC
ATCAGTCATCACAGAATTCATGGTGGTAAGAAAGCCTACGAAGATGAGGACGGTGGGAAGAACTTTATCT
ATAACTCACAGCCTATTCAGCATCAGAACTTATATTGGTGA

Translation (386 aa):
MAQVSVLFHDVYIDFSQEEWECLTEEQRDLYRDVMLENYSNLLSMVLESRCEAQKLFLKKELYEIETAQW
EIMRKLTRQDLQCSSLSSAREWHGHRERQRGSQERQFSELIINRDDVPTLSQCPSFRLQQIIKNKEKYCA
SKENREHYKHGSRFATHQIVRTTEKPYECKDCGKTFRHPSGLTHHHKIHTGKKPFECKECGKTFICGSDL
TRHHRIHTGEKPYECKDCGKAFSSGSNFTRHQRIHTGEKPYECKECGKAFSSGSNFTQHQRIHTGEKPYE
CKECGNAFSQSSQLIKHQRIHTGEKPYECKECEKAFRSGSDLTRHQRIHTGEKPYECKICGKAYSQSSQL
ISHHRIHGGKKAYEDEDGGKNFIYNSQPIQHQNLYW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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