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Report for CCDS39345.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39345.1 Public Mus musculus 5 Zfp157 23 108 98 CCDS HistoryNCBI Gene:72154Re-query CCDS DB by CCDS ID:39345.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39345.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000085856.11 ENSMUSP00000083018.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000085856.11Link to Ensembl Protein Viewer:ENSMUSP00000083018.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000085856Re-query CCDS DB by Protein ID:ENSMUSP00000083018
Original member Current member NCBI NM_028130.3 NP_082406.2 Accepted alive Link to Nucleotide Sequence:NM_028130.3Link to Protein Sequence:NP_082406.2Re-query CCDS DB by Nucleotide ID:NM_028130Re-query CCDS DB by Protein ID:NP_082406Link to BLAST:NP_082406.2

Chromosomal Locations for CCDS 39345.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 138441627 138441629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138444752 138444878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138447515 138447607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138454980 138455089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138455875 138457245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1704 nt):
ATGGGGTTGGTGTCATTTGAAGACGTAGCAGTGGACTTCACTTGGCAGGAATGGCAGGAGCTGGATGCTG
CTCAGAGGACCCTCTACAGGGACGTGATGCTGGAGAACTATAGCAGCCTGGTATCCTTGGGGCACTGCGT
GACTAAACCTGAGTTGATCTTAAGGTTGGAGCATGGATTCCAGCCATGGAGCATAGGAGACACTTCAGTC
TGGCGTCTCCCAGGTGTTCTTGAAGTTTATACTCCAAATGAGAGTTGCCTGGAAAATGCAGAGAGTCGTA
TGTGGCCAGTGGGAAGCATCAACAGAAATCTTTCAAATAAAGAGATGATTGAAGCAGAAATGAAGGTTCA
ACTGGAACTTCCCCGAGGTACAAAACCCTATGAGTGTAAACCGTGTATGAAAATGGTCAGCCTGCCATCG
CAGTGCAGCAAGCAGCATGCATACTATCCAAGTGTGAAACCATACGAATGGAAGGAATGTCAGAAAGCTT
TCTGTTACAAGTCAGCGCTCACTCAACACCAGAGAGCTCGTACAAGATTGAAGATCTATCAGTGTACAGA
ATGCAAGAAAGCTTTCTCCTCCAAATCAGAACTCACTGTGCATCATAGAATTCATACTGGTGAGAAGCCC
CATGCATGTGAAGAATGTGGGAAAGCTTTCTATCGTAAGTCAACCCTTACAGTACATCAGAAAACTCATA
GAGGTGAGAAACCTTACGAATGTAAAGAATGTTGGAAAGCTTTCTATTATAAGTCAACCCTCACTGAACA
TCAGCGAATTCATACCGGCGAGAAGCCTTATGTGTGTAAAGACTGTGGCAAGGCTTTCTTCTACAAGTCA
AACTTAACTCGCCATCATAGAACTCATACACGTGAGAAACCTTATGAATGCAAAGAGTGCAGGAAAGGTT
TTTCCTCCAAGTCAGAGCTCACTTCACATCATAGAACTCATACCGGGGAGAAGCCCTATCAGTGTGAGGA
ATGTGGCAAAGCTTTTTACTGCAAGTCAACCCTTCGTGTACATCAAAAAATACATTCCGGAGAAAAGCCT
TATGAGTGTAAGGAATGTCAGAAATCTTTCTATTATAAGTCAACTCTAACTGAACATCAGAGAACTCATA
CAGGTGAAAAGCCCTATGAATGTAAAGACTGTGGCAAGGCTTTCTTCTACAAGTCACAGTTAACTCGCCA
TCATAGAATTCATACAGGTGAGAAGCCTTATGAATGCGAAGAGTGCAGAAAAGCTTTCTCCTCCAAGTCA
GAGCTCACTGCTCATCATAGAACTCATACCGGCGAGAGGCCCTATGAATGTAAAGACTGTGGCAAATGTT
TCTATCGCAAGTCACACTTAACTCTTCATCATAGAATCCATACAGGTGAGAAGCCCTATGAATGTAAAGA
TTGCAGAAAAGCTTTTTTCTGCAAGTCAGGACTCGCCCGACATCTGGGAACTCATACACATGGTACTAAT
ACAAAGAACAGAGAAAAGCATTTTCCTGCAACTCACAGCTCAGTCAATATCAGAAATGATATACAAGTTA
GAAACCCTGTGGCTCTAAATAATGAAAAAAAACTCTCTACTATAAATCACTCCTCAGTTCATATGATGGA
CTTCTTAGAGTTGAGAAGTCCTATAGATGTACATAATGCAGGAAAACTTACCTTCTTAACTCATGCCTCA
TTCAATGTGAATGAACTCAGGTGA

Translation (567 aa):
MGLVSFEDVAVDFTWQEWQELDAAQRTLYRDVMLENYSSLVSLGHCVTKPELILRLEHGFQPWSIGDTSV
WRLPGVLEVYTPNESCLENAESRMWPVGSINRNLSNKEMIEAEMKVQLELPRGTKPYECKPCMKMVSLPS
QCSKQHAYYPSVKPYEWKECQKAFCYKSALTQHQRARTRLKIYQCTECKKAFSSKSELTVHHRIHTGEKP
HACEECGKAFYRKSTLTVHQKTHRGEKPYECKECWKAFYYKSTLTEHQRIHTGEKPYVCKDCGKAFFYKS
NLTRHHRTHTREKPYECKECRKGFSSKSELTSHHRTHTGEKPYQCEECGKAFYCKSTLRVHQKIHSGEKP
YECKECQKSFYYKSTLTEHQRTHTGEKPYECKDCGKAFFYKSQLTRHHRIHTGEKPYECEECRKAFSSKS
ELTAHHRTHTGERPYECKDCGKCFYRKSHLTLHHRIHTGEKPYECKDCRKAFFCKSGLARHLGTHTHGTN
TKNREKHFPATHSSVNIRNDIQVRNPVALNNEKKLSTINHSSVHMMDFLELRSPIDVHNAGKLTFLTHAS
FNVNELR


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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