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Report for CCDS20136.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20136.1 Public Mus musculus 6 Snx10 23 108 98 CCDS HistoryNCBI Gene:71982Re-query CCDS DB by CCDS ID:20136.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20136.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000049152.14 ENSMUSP00000044165.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000049152.14Link to Ensembl Protein Viewer:ENSMUSP00000044165.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000049152Re-query CCDS DB by Protein ID:ENSMUSP00000044165
Original member Current member EBI ENSMUST00000114439.7 ENSMUSP00000110082.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114439.7Link to Ensembl Protein Viewer:ENSMUSP00000110082.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000114439Re-query CCDS DB by Protein ID:ENSMUSP00000110082
Original member Current member EBI ENSMUST00000179365.7 ENSMUSP00000136974.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000179365.7Link to Ensembl Protein Viewer:ENSMUSP00000136974.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000179365Re-query CCDS DB by Protein ID:ENSMUSP00000136974
Original member Current member NCBI NM_001127348.1 NP_001120820.1 Accepted alive Link to Nucleotide Sequence:NM_001127348.1Link to Protein Sequence:NP_001120820.1Re-query CCDS DB by Nucleotide ID:NM_001127348Re-query CCDS DB by Protein ID:NP_001120820Link to BLAST:NP_001120820.1
Original member Current member NCBI NM_001127349.1 NP_001120821.1 Accepted alive Link to Nucleotide Sequence:NM_001127349.1Link to Protein Sequence:NP_001120821.1Re-query CCDS DB by Nucleotide ID:NM_001127349Re-query CCDS DB by Protein ID:NP_001120821Link to BLAST:NP_001120821.1
Original member Current member NCBI NM_001361576.1 NP_001348505.1 Accepted alive Link to Nucleotide Sequence:NM_001361576.1Link to Protein Sequence:NP_001348505.1Re-query CCDS DB by Nucleotide ID:NM_001361576Re-query CCDS DB by Protein ID:NP_001348505Link to BLAST:NP_001348505.1
Original member Current member NCBI NM_001361577.1 NP_001348506.1 Accepted alive Link to Nucleotide Sequence:NM_001361577.1Link to Protein Sequence:NP_001348506.1Re-query CCDS DB by Nucleotide ID:NM_001361577Re-query CCDS DB by Protein ID:NP_001348506Link to BLAST:NP_001348506.1
Original member Current member NCBI NM_001361578.1 NP_001348507.1 Accepted alive Link to Nucleotide Sequence:NM_001361578.1Link to Protein Sequence:NP_001348507.1Re-query CCDS DB by Nucleotide ID:NM_001361578Re-query CCDS DB by Protein ID:NP_001348507Link to BLAST:NP_001348507.1
Original member Current member NCBI NM_001361579.1 NP_001348508.1 Accepted alive Link to Nucleotide Sequence:NM_001361579.1Link to Protein Sequence:NP_001348508.1Re-query CCDS DB by Nucleotide ID:NM_001361579Re-query CCDS DB by Protein ID:NP_001348508Link to BLAST:NP_001348508.1
Original member Current member NCBI NM_001361580.1 NP_001348509.1 Accepted alive Link to Nucleotide Sequence:NM_001361580.1Link to Protein Sequence:NP_001348509.1Re-query CCDS DB by Nucleotide ID:NM_001361580Re-query CCDS DB by Protein ID:NP_001348509Link to BLAST:NP_001348509.1
Original member Current member NCBI NM_001361581.1 NP_001348510.1 Accepted alive Link to Nucleotide Sequence:NM_001361581.1Link to Protein Sequence:NP_001348510.1Re-query CCDS DB by Nucleotide ID:NM_001361581Re-query CCDS DB by Protein ID:NP_001348510Link to BLAST:NP_001348510.1
Original member Current member NCBI NM_028035.4 NP_082311.3 Accepted alive Link to Nucleotide Sequence:NM_028035.4Link to Protein Sequence:NP_082311.3Re-query CCDS DB by Nucleotide ID:NM_028035Re-query CCDS DB by Protein ID:NP_082311Link to BLAST:NP_082311.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001120820.1 201 Q9CWT3 201 100% 0 0
NP_001120821.1 201 Q9CWT3 201 100% 0 0
NP_001348505.1 201 Q9CWT3 201 100% 0 0
NP_001348506.1 201 Q9CWT3 201 100% 0 0
NP_001348507.1 201 Q9CWT3 201 100% 0 0
NP_001348508.1 201 Q9CWT3 201 100% 0 0
NP_001348509.1 201 Q9CWT3 201 100% 0 0
NP_001348510.1 201 Q9CWT3 201 100% 0 0
NP_082311.3 201 Q9CWT3 201 100% 0 0

Chromosomal Locations for CCDS 20136.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 51562041 51562064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 51575903 51575989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 51579850 51579950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 51580302 51580400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 51588216 51588428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 51588881 51588962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (606 nt):
ATGTTCCCAGAACAGCAGAAAGAGGAGTTCGTGAGTGTCTGGGTCCGGGACCCCAGGATTCAGAAGGAGG
ACTTTTGGCACTCTTATATCGACTATGAGATCTGCATTCACACAAATAGCATGTGTTTTACAATGAAAAC
ATCTTGTGTACGAAGAAGGTATAGAGAGTTCGTGTGGCTGAGGCAAAGACTCCAAAGCAACGCGTTGCTG
GTACAATTACCAGAACTTCCGTCTAAAAACCTGTTTTTCAACATGAACAATCGCCAGCATGTCGACCAAC
GCCGCCAGGGCTTGGAAGATTTCCTCAGAAAAGTCCTGCAGAATGCACTCTTGCTTTCCGATAGCAGCCT
CCACCTCTTCCTGCAGAGCCATCTGAACTCCGAGGACATTGAAGCATGTGTTTCTGGGCAGACCAAGTAC
TCGGTGGAAGAAGCCATTCACAAGTTTGCTTTAATGAATAGACGGTTTCCCGAAGAAGAAGAAGAAGGGA
AGAAAGACGCCGACGTAGAGTATGATTCAGAAAGTTCATCCTCTGGGCTTGGACACAGTAGTGATGACAG
CAGTTCTCATGGATGTAAAACGAGCCCAGCTCTGCAGGAGTCCTGA

Translation (201 aa):
MFPEQQKEEFVSVWVRDPRIQKEDFWHSYIDYEICIHTNSMCFTMKTSCVRRRYREFVWLRQRLQSNALL
VQLPELPSKNLFFNMNNRQHVDQRRQGLEDFLRKVLQNALLLSDSSLHLFLQSHLNSEDIEACVSGQTKY
SVEEAIHKFALMNRRFPEEEEEGKKDADVEYDSESSSSGLGHSSDDSSSHGCKTSPALQES


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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