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Report for CCDS39136.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39136.1 Public Mus musculus 5 Cabs1 23 108 98 CCDS HistoryNCBI Gene:70977Re-query CCDS DB by CCDS ID:39136.1See the combined annotation on chromosome 5 in Sequence Viewer

Public Note for CCDS 39136.1
This CCDS ID represents the protein described in PMID: 19208547 and is supported by AK076636.1. It should be noted this transcript is predicted to undergo nonsense-mediated mRNA decay (NMD). However, the protein is represented because it was detected endogenously in PMID: 19208547. It is likely that the majority of transcripts representing this variant will undergo NMD, while some low level of NMD escape may allow for the expression of this protein.

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
Nonsense-mediated decay (NMD) candidate

Sequence IDs included in CCDS 39136.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000008051.4 ENSMUSP00000008051.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000008051.4Link to Ensembl Protein Viewer:ENSMUSP00000008051.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000008051Re-query CCDS DB by Protein ID:ENSMUSP00000008051
Original member Current member NCBI NM_027631.3 NP_081907.1 Accepted alive Link to Nucleotide Sequence:NM_027631.3Link to Protein Sequence:NP_081907.1Re-query CCDS DB by Nucleotide ID:NM_027631Re-query CCDS DB by Protein ID:NP_081907Link to BLAST:NP_081907.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081907.1 391 Q8C633 391 100% 0 0

Chromosomal Locations for CCDS 39136.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 87979492 87980667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1176 nt):
ATGGCTGAAGATGGATCGCCCAAAATTTATTCTCGACCTCCAAGAGACAACAGTAAAACACCAACGGAAG
CAGACATTTTCTTTGGGGCTGACAACACCATTCCTAAATCAGAAACAACTATTACCTCGGAAGGAGACCA
CGTTACTTCAGTAAATGACTGCACACCGGATGGTGATTTTTCAACTACAGTCAACAAGCTCACACCTACA
AAGGAAAAACTCAAATTAGAAGATGATATTGAAGGCTGTCTGAAATTAACAACTCTTCCAGAGAAAGAAA
TTACCACTCCAACTGAAACTCCAAACTCCAAACCTAAGGGGTCAATTACTGAAAATTTCATTCCAGTGAA
AATTGGAAATACCTCATCCCCAGTTGGTACTGTTTCTTTAATAGATTTTTCCAGTAACACGGCAAAAGAA
GATATCTTCTTAACCACCATTGACACAGGAGAAAAAGAAGTCGTACCCACTACTGAGTTCTCTGGCACAC
TAGAGGACAGTGCTGCTGATGTGGAGGATGCCTCTGGATTTCCAGATGAAAGCACTGAAACTGATGTTCC
TTCCTCTGCCACCTCAGATGCTCCTGATGATGGAGCTGTTCAGGTCACTGACTCCTTTAGTCCTGAGGCT
GGAGTCCCCCCCTCAACTGAAAAGGAGGTCACCACCATTCCAGACATAACCAACATTGCAGAAGAGAATG
TAACTGAGATCAAATTGATTGTTTCAGAAGATAGGCCCAAAACTGTGACTAAACTAAGTGACTCCGAAGA
AGAAAAATTTATCACTGTTTTTGAACTCACTAACTCGGCTGAAAAAGCCAAAGATAATGTGGAAGATCCT
TTAAATGATGAGGAATCGACTGATGGAGCTAATGATTGGATGGAAAAAGAAACTGCAAGTGAGGCAGAGT
CCCATGCTGTTCTGCTCACTGCTGTGGAATCGAGGTATGACTTTATTGTCACTGCCTCAGAAACTGACAA
CGTCATGGAGGAATCACATGTGAACACCACAGATTTGCCTGAAAACGAGACAACAGAGTCTGTCACTAAT
GTCACAGAGGAGCTTCCTTCAGTGACCTCTATAGTAGATACCCTTAAGGACAAGGAGGACTTATCTACCA
CCAACTCCGGTCTCTTCAAACTGCTGAAAGAAGAACCAGACGATCTCATGATGTAA

Translation (391 aa):
MAEDGSPKIYSRPPRDNSKTPTEADIFFGADNTIPKSETTITSEGDHVTSVNDCTPDGDFSTTVNKLTPT
KEKLKLEDDIEGCLKLTTLPEKEITTPTETPNSKPKGSITENFIPVKIGNTSSPVGTVSLIDFSSNTAKE
DIFLTTIDTGEKEVVPTTEFSGTLEDSAADVEDASGFPDESTETDVPSSATSDAPDDGAVQVTDSFSPEA
GVPPSTEKEVTTIPDITNIAEENVTEIKLIVSEDRPKTVTKLSDSEEEKFITVFELTNSAEKAKDNVEDP
LNDEESTDGANDWMEKETASEAESHAVLLTAVESRYDFIVTASETDNVMEESHVNTTDLPENETTESVTN
VTEELPSVTSIVDTLKDKEDLSTTNSGLFKLLKEEPDDLMM


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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