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Report for CCDS19469.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19469.1 Public Mus musculus 5 Abraxas1 23 108 98 CCDS HistoryNCBI Gene:70681Re-query CCDS DB by CCDS ID:19469.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19469.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000055245.12 ENSMUSP00000055895.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000055245.12Link to Ensembl Protein Viewer:ENSMUSP00000055895.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000055245Re-query CCDS DB by Protein ID:ENSMUSP00000055895
Original member Current member EBI ENSMUST00000117364.7 ENSMUSP00000114050.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000117364.7Link to Ensembl Protein Viewer:ENSMUSP00000114050.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000117364Re-query CCDS DB by Protein ID:ENSMUSP00000114050
Original member Current member EBI ENSMUST00000200657.4 ENSMUSP00000143465.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000200657.4Link to Ensembl Protein Viewer:ENSMUSP00000143465.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000200657Re-query CCDS DB by Protein ID:ENSMUSP00000143465
Original member NCBI NM_172405.3 NP_765993.1 Updated not alive Link to Nucleotide Sequence:NM_172405.3Link to Protein Sequence:NP_765993.1Re-query CCDS DB by Nucleotide ID:NM_172405Re-query CCDS DB by Protein ID:NP_765993
Current member NCBI NM_172405.4 NP_765993.1 Accepted alive Link to Nucleotide Sequence:NM_172405.4Link to Protein Sequence:NP_765993.1Re-query CCDS DB by Nucleotide ID:NM_172405Re-query CCDS DB by Protein ID:NP_765993Link to BLAST:NP_765993.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_765993.1 407 Q8BPZ8-1 407 100% 0 0

Chromosomal Locations for CCDS 19469.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 100806059 100806489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 100806779 100806890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 100809559 100809643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 100809756 100809875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 100812009 100812202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 100815162 100815228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 100817962 100817998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 100818517 100818607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 100820831 100820917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1224 nt):
ATGGAGGGCGAGAGCACGTTGGGGGTGCTGTCTGGCTTCGTGCTCGGCGCGCTCACTTTCCATCATCTCA
ACACAGACTCAGACACGGAAGGTTTTCTCCTCGGTGAAATGAAAGGTGAAGCCAAGAATAGCATTACTGA
TTCACAGATGGACAACGTTAAAGTTGTTTATACAATTGACATTCAGAAATATATCCCATGCTACCGGCTT
TTTAGCTTTTATAATTCTTTAGGTGAAGTAAACGAACATGCACTGAAGAAGGTTCTTTCAAATGTCAGAA
AGACTGTGGTGGGTTGGTATAAATTCCGTCGTCACTCGGATCAGATCATGACATTTAGAGAGCAGTTACT
CCACAGAAACTTACAGACACATCTTTCAAGCCCTGAGCTGGTTTTCCTGTTGTTAACACCGAGTATAACA
ACAGAAAGCTGCTCCACTCACTGCCTGGAACACGCCTTATATAAACCTCAAAGGGGGCTTTTTCATAGGG
TACCATTGGTGGTTACCAATCTGGGAATGTCTGATCAACTGGGTTATAAAACAGAACCTGCTTCCTGTAC
GTCCACTGTCTTTAGTAGAGCTGTGAGGACACACAGTTCTCAGTTCTTTAATGAAGATGGATCATTAAAG
GAAGTCCATAAGATAAATGAAATGTATGCTGCTGTACAAGAAGAGTTAAAGAGTATATGCCAAAAAGTTG
AACAAAGTGAACGAGAAGTAGAGAAACTATTGATGGATGTAAACCAATTAAAAGAAGTTAGAAGAACCCA
GCAAGCACGGGCTACAGGAGCAGGAGAGAAGAATGTCCAGAGAAACCCACAGGAGAACATCCTTCTTTGT
CAAGCTTTGCGAACATTTTTTCCAGAGTCTGAAGTTCTTCATTCTTGCGTTATTTCTTTGAAAAATAGAC
ACATTTCTCCCAGTGGGTGTAACGTTAACCACCATGTTGATGTAGTGGATCAGCTGACCTTAATGGTAGA
GTATGTGTACAGCCCTGAAGCTAGTCCAGTGCCCACAGCCCAGCTACGTAAACGGAAGGCTCTAGACACA
CACGACCAGGGGTCTGTGAAGAGACCACGGCTGCTGGAGACAGAAAGCAGACCTTCTGTGGCAGCGTCCC
GCAGCAGGCACCAAGACAAGGCTTCCTCAAGCAGCCTAGATATAGACATAGAGATGGGGAGCCCAGAAGA
TGATGCTGACTATCCTCGCTCTCCCACATTTTAA

Translation (407 aa):
MEGESTLGVLSGFVLGALTFHHLNTDSDTEGFLLGEMKGEAKNSITDSQMDNVKVVYTIDIQKYIPCYRL
FSFYNSLGEVNEHALKKVLSNVRKTVVGWYKFRRHSDQIMTFREQLLHRNLQTHLSSPELVFLLLTPSIT
TESCSTHCLEHALYKPQRGLFHRVPLVVTNLGMSDQLGYKTEPASCTSTVFSRAVRTHSSQFFNEDGSLK
EVHKINEMYAAVQEELKSICQKVEQSEREVEKLLMDVNQLKEVRRTQQARATGAGEKNVQRNPQENILLC
QALRTFFPESEVLHSCVISLKNRHISPSGCNVNHHVDVVDQLTLMVEYVYSPEASPVPTAQLRKRKALDT
HDQGSVKRPRLLETESRPSVAASRSRHQDKASSSSLDIDIEMGSPEDDADYPRSPTF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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