NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
The CCDS database will be unavailable on Tuesday, April 30, 2024, starting at 9:30 a.m. EDT for up to 60 minutes.
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS18456.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18456.1 Public Mus musculus 4 Btf3l4 23 108 98 CCDS HistoryNCBI Gene:70533Re-query CCDS DB by CCDS ID:18456.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18456.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102739.1 ENSMUSP00000099800.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102739.1Link to Ensembl Protein Viewer:ENSMUSP00000099800.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000102739Re-query CCDS DB by Protein ID:ENSMUSP00000099800
Original member Current member EBI ENSMUST00000102740.7 ENSMUSP00000099801.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102740.7Link to Ensembl Protein Viewer:ENSMUSP00000099801.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000102740Re-query CCDS DB by Protein ID:ENSMUSP00000099801
Original member Current member EBI ENSMUST00000102741.7 ENSMUSP00000099802.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102741.7Link to Ensembl Protein Viewer:ENSMUSP00000099802.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000102741Re-query CCDS DB by Protein ID:ENSMUSP00000099802
Original member Current member EBI ENSMUST00000102742.10 ENSMUSP00000099803.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102742.10Link to Ensembl Protein Viewer:ENSMUSP00000099803.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000102742Re-query CCDS DB by Protein ID:ENSMUSP00000099803
Original member NCBI NM_001356361.1 NP_001343290.1 Updated not alive Link to Nucleotide Sequence:NM_001356361.1Link to Protein Sequence:NP_001343290.1Re-query CCDS DB by Nucleotide ID:NM_001356361Re-query CCDS DB by Protein ID:NP_001343290
Current member NCBI NM_001356361.2 NP_001343290.1 Accepted alive Link to Nucleotide Sequence:NM_001356361.2Link to Protein Sequence:NP_001343290.1Re-query CCDS DB by Nucleotide ID:NM_001356361Re-query CCDS DB by Protein ID:NP_001343290Link to BLAST:NP_001343290.1
Original member NCBI NM_027453.3 NP_081729.1 Updated not alive Link to Nucleotide Sequence:NM_027453.3Link to Protein Sequence:NP_081729.1Re-query CCDS DB by Nucleotide ID:NM_027453Re-query CCDS DB by Protein ID:NP_081729
Current member NCBI NM_027453.4 NP_081729.1 Accepted alive Link to Nucleotide Sequence:NM_027453.4Link to Protein Sequence:NP_081729.1Re-query CCDS DB by Nucleotide ID:NM_027453Re-query CCDS DB by Protein ID:NP_081729Link to BLAST:NP_081729.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001343290.1 158 Q9CQH7 158 100% 0 0
NP_081729.1 158 Q9CQH7 158 100% 0 0

Chromosomal Locations for CCDS 18456.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 108816840 108816886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108818185 108818244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108819136 108819337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108826100 108826213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108830518 108830571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (477 nt):
ATGAATCAAGAAAAGTTAGCCAAACTTCAAGCTCAGGTCCGGATAGGGGGCAAGGGTACAGCTCGCAGGA
AGAAGAAGGTGGTACATAGGACAGCTACTGCTGATGACAAAAAGCTTCAGAGTTCACTAAAGAAACTGGC
TGTGAACAATATAGCTGGTATTGAAGAGGTGAATATGATTAAAGACGATGGCACGGTTATTCATTTCAAC
AATCCCAAAGTCCAAGCTTCCCTCTCCGCTAACACCTTTGCAATTACTGGTCATGCAGAAGCCAAACCAA
TCACAGAAATGCTTCCTGGGATATTAAGTCAGCTTGGTGCTGACAGCTTAACGAGCCTTAGAAAGTTAGC
TGAACAGTTCCCACGGCAAGTATTGGATAGTAAAGCGCCCAAACCAGAAGACATCGATGAAGAGGATGAT
GATGTTCCAGATCTTGTAGAAAATTTTGATGAAGCATCGAAAAATGAAGCTAACTAA

Translation (158 aa):
MNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQSSLKKLAVNNIAGIEEVNMIKDDGTVIHFN
NPKVQASLSANTFAITGHAEAKPITEMLPGILSQLGADSLTSLRKLAEQFPRQVLDSKAPKPEDIDEEDD
DVPDLVENFDEASKNEAN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH