NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS24839.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24839.1 Public Mus musculus 11 Cox10 23 108 98 CCDS HistoryNCBI Gene:70383Re-query CCDS DB by CCDS ID:24839.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24839.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000049091.8 ENSMUSP00000040138.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000049091.8Link to Ensembl Protein Viewer:ENSMUSP00000040138.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000049091Re-query CCDS DB by Protein ID:ENSMUSP00000040138
Original member Current member NCBI NM_178379.3 NP_848466.1 Accepted alive Link to Nucleotide Sequence:NM_178379.3Link to Protein Sequence:NP_848466.1Re-query CCDS DB by Nucleotide ID:NM_178379Re-query CCDS DB by Protein ID:NP_848466Link to BLAST:NP_848466.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848466.1 443 Q8CFY5 443 100% 0 0

Chromosomal Locations for CCDS 24839.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 63964122 63964528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 63976244 63976476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 63993886 63993956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 64045227 64045351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 64071518 64071836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 64073537 64073670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 64079336 64079378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1332 nt):
ATGGCCGCGTCCCCGCACACCATTTCCTCGCGCCTCCTCACAGGCTCAGTAGGAGGATGTATCTGGTATT
TAGAGAGAAGAGCTATACAGGGATTGCCACACAGGGTCACACGTCTGTTCAGGAATGTCAGTAATCAGTG
GGTCACGCTCCAGCACTTGAGCTTCCTCAAGCGCATGTATGTCACACAGCTGCACAGGGGCCTTAGCCAG
CGAGTCAAACCAAAGCCAGAGCCACCGGCGTCTCCTTTCCTTGAACACACGTCTTCAGGGCAGGCTAGAG
CGGACGAGGATGAGCTGCCGTCTTTCCCAGCACCCAGTCGGCCTCTGTCCCGGAAGCCAAATGAGGAGTT
GGTGGAGCTGGAGGCGACCTCCATAGTGGACCATTCCCTCGACACAGCCAAAGAGAAAAAGGAAGAAAGG
CAGTGGAAAGAGATGAAACTTCACACTGATGATCTGCCTGGCATTTTGGCCAGGCTGTCCAAGATCAAAC
TCACAGCTCTTGTGGTAAGCACCACTTCAGCAGGCTTTGCACTGGCTCCAGGCCCTTTCGACTGGTCCTG
CTTCCTGCTTACATCCCTTGGAACCGGCCTCGCATCCTGTGCTGCCAACTCCATCAATCAGTTTTTTGAG
GTGCCGTTCGACTCAAACATGAATAGAACAAAGAACAGGCCTCTGGTTCGAGGGCAGATAAGCCCATTGC
TAGCCGTGTCTTTTGCCACCTGCTGTGCTGTGCCAGGAGTGGCCCTTCTGACCTGGGGAGTGAATCCACT
CACAGGGGCCTTGGGGGTCTTCAACATTTTCCTGTATACCTGTTGTTACACACCACTGAAGAGGGTCAGC
ATCACCAATACCTGGGTTGGAGCCGTGGTTGGAGCCATCCCTCCTGTCATGGGCTGGACGGCCGCCACTG
GAAGCCTTGATGCTGGAGCGCTTCTTCTGGGAGGGATCCTGTACTCCTGGCAATTCCCCCACTTCAATGC
CCTGAGCTGGGGCCTCCGTGAAGACTACTCCCGAGGAGGCTACTGTATGATGTCCGTCACCCATCCAGCC
CTCTGCCGGCGGGTGGCACTGCGCCACTGCCTGGCCCTGATTGCTCTGTCGACTGCTGCCCCGGTCCTGG
ACATCACCACCTGGGTCTTCCCTGTCATCTCCCTCCCCATCAACCTGTACATTTCCTACCTCGGCTTCCG
CTTCTACGTGGACGCAGACCGCAGGAGCTCAAGGAAACTGTTCTTCTGCAGCCTGTGGCACCTGCCGCTG
CTCCTGCTGCTCATGCTCACCTGTAAGCAGCGGCCCGGGCAGGAGGGGGACAAGGGAGAGGCTCCGAGCT
GA

Translation (443 aa):
MAASPHTISSRLLTGSVGGCIWYLERRAIQGLPHRVTRLFRNVSNQWVTLQHLSFLKRMYVTQLHRGLSQ
RVKPKPEPPASPFLEHTSSGQARADEDELPSFPAPSRPLSRKPNEELVELEATSIVDHSLDTAKEKKEER
QWKEMKLHTDDLPGILARLSKIKLTALVVSTTSAGFALAPGPFDWSCFLLTSLGTGLASCAANSINQFFE
VPFDSNMNRTKNRPLVRGQISPLLAVSFATCCAVPGVALLTWGVNPLTGALGVFNIFLYTCCYTPLKRVS
ITNTWVGAVVGAIPPVMGWTAATGSLDAGALLLGGILYSWQFPHFNALSWGLREDYSRGGYCMMSVTHPA
LCRRVALRHCLALIALSTAAPVLDITTWVFPVISLPINLYISYLGFRFYVDADRRSSRKLFFCSLWHLPL
LLLLMLTCKQRPGQEGDKGEAPS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH