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Report for CCDS37962.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37962.1 Public Mus musculus 19 Lipn 23 108 98 CCDS HistoryNCBI Gene:70166Re-query CCDS DB by CCDS ID:37962.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 37962.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025682.11 ENSMUSP00000025682.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025682.11Link to Ensembl Protein Viewer:ENSMUSP00000025682.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000025682Re-query CCDS DB by Protein ID:ENSMUSP00000025682
Original member Current member NCBI NM_027340.2 NP_081616.1 Accepted alive Link to Nucleotide Sequence:NM_027340.2Link to Protein Sequence:NP_081616.1Re-query CCDS DB by Nucleotide ID:NM_027340Re-query CCDS DB by Protein ID:NP_081616Link to BLAST:NP_081616.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081616.1 400 Q3U4B4 400 100% 0 0

Chromosomal Locations for CCDS 37962.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 34068629 34068742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 34069414 34069531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 34071668 34071866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 34073517 34073626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 34076905 34077041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 34078934 34079080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 34080706 34080777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 34081287 34081358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 34084616 34084849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1203 nt):
ATGCCTATGATGTGGCTATTTTTAACAACGGCTTGTTTGATACCTGGAACCTTAAGCGCTGGTGGATTCT
TG
GATTTTGAAAATAAAGTAAATCCTGAAGTGTGGATGAATGCTAGTGAAATAATCATGTACAACGGCTA
C
CCCAGTGAAGAGTATGACGTCACCACCGCAGATGGGTACATTCTCGCCATCAACAGAATTCCCCATGGG
AGA
GCACAGACTGGGCAGACAGGACCCCGGCCTGTTGTATATATGCAACATGCCTTGTTTGCAGACAATG
CC
TACTGGCTTGAGAATTTTGCCAATGGAAGCCTAGGGTTCATACTAGCAGATGCAGGTTATGATGTGTG
G
ATGGGAAACAGTCGAGGAAACACTTGGTCAAGAAGACACAAAACTCTCTCAGCAAATGAAGAGAAATTC
TGG
GCTTTTAGCTTCAATGAAATGGCCAAATATGACCTCCCAGGGATAATAGATTTCATTGTGAATAAAA
CA
GGTCAGGAGAAGTTGTACTTCATTGGACATTCACTCGGCACTACAATAGGATTTGTAGCCTTTTCCAC
C
ATGCCTGAACTGGCGCAAAGAATCAAAATGAATTTTGCCTTGGGTCCTGTGATCTCATTCAAATATCCT
ACA
AGCGTTTTTACCAATTTGTTTCTACTTCCAAAATCCATAATCAAGCTTGTGTTTGGCACCAAAGGTG
TC
CTTTTAGAAGATAAGAATGCAAGGATGTCATTTATCACATTCTGCAACCAAAAGCTACTCCAACCATT
G
TGTAGTGAATTTATGTCCTTGTGGGCTGGATTCAACAAAAAAAATATGAATATGAGTCGACTGGATGTG
TAC
ATGGCCCACGCTCCCACAGGATCATCAATTCAGAACATGCTGCACATAAAGCAGCTTTACCGATCTG
AT
GAATTCAGAGCTTATGACTGGGGAAGTGAAGCTGAAAATATGAATCACTACAACCAGAGTTACCCTCC
C
TTGTATGACCTGACGGCCATGAAGGTACCCACTGCCATTTGGGCTGGTGGACACGATGTGCTCGTAACT
CCT
CAAGATGTAGCCAGGATACTTCCCCAAATTACAAATCTACGCTACTTCAAGCAATTTCCAGATTGGA
AC
CATTTTGATTTTGTCTGGGGCCTTGATGCCCCTCAAAGACTGTACAGTAAAATCATAAGTTTGATGAA
A
GAATACTTCTAA


Translation (400 aa):
MPMMWLFLTTACLIPGTLSAGGFLDFENKVNPEVWMNASEIIMYNGYPSEEYDVTTADGYILAINRIPHG
R
AQTGQT
GPRPVVYMQHALFADNAYWLENFANGSLGFILADAGYDVWMGNSRGNTWSRRHKTLSANEEKF
W
AF
SFNEMAKYDLPGIIDFIVNKTGQEKLYFIGHSLGTTIGFVAFSTMPELAQRIKMNFALGPVISFKYP
T
SVFTNLFLLPKSIIK
LVFGTKGVLLEDKNARMSFITFCNQKLLQPLCSEFMSLWAGFNKKNMNMSRLDV
Y
MAHAPTGSSIQNMLHIKQ
LYRSDEFRAYDWGSEAENMNHYNQSYPPLYDLTAMKVPTAIWAGGHDVLVT
P
QDVARILPQITNLRYFKQFPDWNHFDFVWGLDAPQRLYSKIISLMKEYF




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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