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Report for CCDS23241.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23241.1 Public Mus musculus 9 Stoml1 23 108 98 CCDS HistoryNCBI Gene:69106Re-query CCDS DB by CCDS ID:23241.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23241.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034883.6 ENSMUSP00000034883.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034883.6Link to Ensembl Protein Viewer:ENSMUSP00000034883.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000034883Re-query CCDS DB by Protein ID:ENSMUSP00000034883
Original member Current member NCBI NM_026942.3 NP_081218.3 Accepted alive Link to Nucleotide Sequence:NM_026942.3Link to Protein Sequence:NP_081218.3Re-query CCDS DB by Nucleotide ID:NM_026942Re-query CCDS DB by Protein ID:NP_081218Link to BLAST:NP_081218.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081218.3 399 Q8CI66 399 99.4987% 0 2

Chromosomal Locations for CCDS 23241.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 58253267 58253399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 58254934 58255040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 58256640 58256789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 58257021 58257224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 58260227 58260422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 58260798 58261013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 58261646 58261839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1200 nt):
ATGCTTGGAAGGTCTGGCTACCGGGCACTGCCCTTAGGGGATTTTGATCGTTTCCAGCAGTCGAGCTTCG
GCTTTCTGGGTTCGCAGAAGGGCTGCTTGTCCCCAGAGCCGGGCAGCGTGGGGCCGGGGGCCGACGCGCC
GGAGAGCTGGCCCTCCTGTCTCTGCCATGGCCTCGTCAGTGTCCTGGGGTTCTTGCTGCTGCTGCTCACC
TTCCCCATTTCCGGCTGGTTTGCTCTGAAGATTGTGCCCACCTATGAGAGGATGATTGTGTTTCGACTGG
GCCGGATCCGTAACCCCCAGGGGCCTGGCATGGTTCTTCTCCTGCCCTTTATTGACTCCTTCCAGAGGGT
AGATTTGAGGACCCGAGCCTTCAACGTTCCTCCTTGCAAGCTGGCCTCTAAGGATGGGGCTGTGCTGTCG
GTGGGAGCTGATGTCCAGTTCCGCATCTGGGACCCAGTGCTATCCGTGATGGCTGTGAAGGACCTGAACA
CAGCTACTCGCATGACAGCCCACAACGCCATGACTAAGGCCCTGCTCAGAAGGCCACTGCAGGAGATCCA
GATGGAGAAGCTCAAGATCGGTGACCAGCTCCTGCTGGAGATCAATGACGTGACCAGAGCTTGGGGACTG
GAGGTCGACCGTGTAGAGCTGGCAGTAGAGGCTGTGTTGCAGCCACCGCAAGACAGCCTGACTGTGCCCA
GCCTGGACAGCACCCTCCAACAGCTGGCCCTCCACTTGCTAGGGGGAAGTATGAACTCAGCGGTCGGACA
TGTTCCATCCCCAGGGCCAGACACCTTGGAGATGATAAATGAAGTGGAACCTCCTGCCTCTCTTGCTGGG
GCCGGGCCTGAGCCCAGCCCGAAGCAGCCCGTGGCTGAGGGGCTCCTCACAGCCCTGCAACCCTTCCTGT
CAGAGGCACTGGTCAGCCAGGTTGGGGCCTGCTACCAGTTCAATGTCATCTTGCCCAGTGGCACCCAGAG
TATCTACTTCCTGGACCTTACTACAGGACAAGGCCGCGTGGGACATGGAGAGCCTGATGGCATCCCTGAC
GTGGTGGTGGAGATGGCTGAAGCAGACTTGCAGGCCTTGTTGAGCAAAGAACTTCGGCCCTTAGGGGCCT
ACATGAGTGGGCGGCTGAAGGTGAAGGGTGACCTGGCCGTGGTCATGAAGCTGGAGGCTGTACTCAAGGC
CTTGAAGTAG

Translation (399 aa):
MLGRSGYRALPLGDFDRFQQSSFGFLGSQKGCLSPEPGSVGPGADAPESWPSCLCHGLVSVLGFLLLLLT
FPISGWFALKIVPTYERMIVFRLGRIRNPQGPGMVLLLPFIDSFQRVDLRTRAFNVPPCKLASKDGAVLS
VGADVQFRIWDPVLSVMAVKDLNTATRMTAHNAMTKALLRRPLQEIQMEKLKIGDQLLLEINDVTRAWGL
EVDRVELAVEAVLQPPQDSLTVPSLDSTLQQLALHLLGGSMNSAVGHVPSPGPDTLEMINEVEPPASLAG
AGPEPSPKQPVAEGLLTALQPFLSEALVSQVGACYQFNVILPSGTQSIYFLDLTTGQGRVGHGEPDGIPD
VVVEMAEADLQALLSKELRPLGAYMSGRLKVKGDLAVVMKLEAVLKALK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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