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Report for CCDS26721.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26721.1 Public Mus musculus 13 Ptcd2 23 108 98 CCDS HistoryNCBI Gene:68927Re-query CCDS DB by CCDS ID:26721.1See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 26721.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022153.7 ENSMUSP00000022153.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022153.7Link to Ensembl Protein Viewer:ENSMUSP00000022153.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000022153Re-query CCDS DB by Protein ID:ENSMUSP00000022153
Original member Current member NCBI NM_026873.2 NP_081149.1 Accepted alive Link to Nucleotide Sequence:NM_026873.2Link to Protein Sequence:NP_081149.1Re-query CCDS DB by Nucleotide ID:NM_026873Re-query CCDS DB by Protein ID:NP_081149Link to BLAST:NP_081149.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081149.1 381 Q8R3K3 381 100% 0 0

Chromosomal Locations for CCDS 26721.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 99320169 99320393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 99321561 99321674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 99326638 99326712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 99329952 99330065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 99332436 99332527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 99332888 99332966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 99336663 99336780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 99339901 99340030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 99343313 99343405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 99344564 99344669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1146 nt):
ATGGCTACAGTGTTTCGGCCCCTGGAACGCCTGCGGGTGCCGCGTCCTTCGCTGCATCCCGGGGTGACGG
GCTCAGGCTCCGCCTGCTGCCGCTGCACTCTCGGAGCTAAAAGATACCTACTCACAGATAACATTGTGAA
GTTAAAGGAATTTCAACATAAGAAGATAGCTATTGCATATAACCTACCTGGCACCAAAGAAATCTATTTC
AGAAACTTGGAAGAGAAGTTGACCCAGAACAAACTCATCTTGAAGGAAGAGTTGAAAACGCTGCTGTACC
TGTGCCAGTCCCTGGAAGATGTGCAGCTGGCGAAAGCCGTCATTTATAGGTACCATGCAGAAAACAAGAA
TTTCACTTTGGGGGAATACAAGTTCGGACCAGTTTTCATGAGGCTGTGCTACGAGCTGGACCTGGAGGAC
TCTGCAGTGGAGCTCGTCAGAGACAAGCATCTACAAGGCTTCTTCCTAGATTCAACGTCATTCAATATTT
TGATGGATATGTTATTTACCAAAGGCAAATATGAACGTGCACTTCAAGTGTTGATCGAAATGAAAAACCA
AGATGTGAGGTTCAGCAAAGAAACCTACATCCTCGCTTTTGCAATCTGCTACAAACTGAATACCCTGGAA
TCGCTTAAAATCTGTACTACGTTAAGAGAAGAAGCCCTAATTAAGGGAGACATTATCTGCAGGAGAGCAT
ACTGTTTTGTAGTGGCATTAGCTCTGAATAAGAACCAGTTGAAAAACGCTGTGTCCATTTTTTCTCAAAT
CGTGAATCCAGAAAGCATAGTGTGTATTAACTTAAATATCTTGATCCACATCCAGTCAAATATGTTGGAA
AGCCTGTTAAAGATCTTAGAGGACTCTCTTGACACAAATTTATCGAAATTTGTAAGAAGACACACATTCT
CAGAGGAAGTGCTGGCCAAAGTGAGGGAAAAACTGAAGGACAGCCCTGCACTCATAGCCAGATTCGATGA
GGTCTATGGGAAGCTGCACGTGAACGGTCAAATCACCGTTCATTCTTTGGATGCTCTGCTCTGCCACGTC
CCCCGGGACAAGAGATCCAACTTGTTGCTGTTAAAGAAGAGGGCAGTCAGCCACCGGACCTTACAGCCTC
TCAGCCGGTCCCTGCTGACCGAGTAA

Translation (381 aa):
MATVFRPLERLRVPRPSLHPGVTGSGSACCRCTLGAKRYLLTDNIVKLKEFQHKKIAIAYNLPGTKEIYF
RNLEEKLTQNKLILKEELKTLLYLCQSLEDVQLAKAVIYRYHAENKNFTLGEYKFGPVFMRLCYELDLED
SAVELVRDKHLQGFFLDSTSFNILMDMLFTKGKYERALQVLIEMKNQDVRFSKETYILAFAICYKLNTLE
SLKICTTLREEALIKGDIICRRAYCFVVALALNKNQLKNAVSIFSQIVNPESIVCINLNILIHIQSNMLE
SLLKILEDSLDTNLSKFVRRHTFSEEVLAKVREKLKDSPALIARFDEVYGKLHVNGQITVHSLDALLCHV
PRDKRSNLLLLKKRAVSHRTLQPLSRSLLTE


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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