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Report for CCDS27088.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27088.1 Public Mus musculus 14 Mrpl52 23 108 98 CCDS HistoryNCBI Gene:68836Re-query CCDS DB by CCDS ID:27088.1See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 27088.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000010550.11 ENSMUSP00000010550.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000010550.11Link to Ensembl Protein Viewer:ENSMUSP00000010550.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000010550Re-query CCDS DB by Protein ID:ENSMUSP00000010550
Original member Current member NCBI NM_026851.2 NP_081127.1 Accepted alive Link to Nucleotide Sequence:NM_026851.2Link to Protein Sequence:NP_081127.1Re-query CCDS DB by Nucleotide ID:NM_026851Re-query CCDS DB by Protein ID:NP_081127Link to BLAST:NP_081127.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081127.1 121 Q9D0Y8-1 121 100% 0 0

Chromosomal Locations for CCDS 27088.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 54426933 54426960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 54427034 54427091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 54427171 54427238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 54428584 54428648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 54429582 54429728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (366 nt):
ATGGCTGCCTTAGGGACCTGGCTGTCCAGTGTCCGGAGATTGCACTGCAGCGTAGTGGCGCGGGCCGGTG
GCCAGTGGCGACTCCAGCAAGGGCTGGCTGCCAACCCTTCCGGCTATGGGCCCCTCACGGAGCTCCCTGA
CTGGTCCTTCGCGGATGGCCGCCCTGCACCCCCAATGAAAGGCCAACTTCGAAGAAAAGCTCAAAGGGAG
AAGCTTGCAAGACGAGTTGTACTGCTGACACAGGAAATGGATGCTGGAATACAGGCATGGAAGCTCAGGC
AGCAGAAATTGCAGGAAGAAAGGAAGAAGGAACATGATCTCAAACCTAAAGGGACTTTACTGAGAAGCCC
ACTTCCGAATCAATAA

Translation (121 aa):
MAALGTWLSSVRRLHCSVVARAGGQWRLQQGLAANPSGYGPLTELPDWSFADGRPAPPMKGQLRRKAQRE
KLARRVVLLTQEMDAGIQAWKLRQQKLQEERKKEHDLKPKGTLLRSPLPNQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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